Rh1DG204700

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000619
Physical Location & Seq
Forward (+)
40055595 .. 40056179
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG204700.1

Sequence Viewer

Length: 585 bp
ATGGATGGGTTTCGTGACTTTCTCGCCTTTGTTGGGTTGCATCATGTACCTTGGTCAGGGCCTAGCTTTATGTGGCGTGGAATTAGAGGTGGGGAAGTGGTCAAGGTTAGACTTGACAGATTCTTATCGAATAAATCGTGGTTGGATAAGTTCCTCCTTTCTAAGGCTTACAATTTAAACCCTAGCAGGAGTGATCATCTCCCCATCCTCCTGGAGGTTAAAGAGCGCCATAGACGACGGAAGCGAAGGAAGAAGAAACGATTCTGGTTTGAACAAATGTGGCTCAGGGAGGCGGAGTGCCGGAGAGTAGTGGAGGATGGATGGAGCCGCGGTGAGAGCAGTGACCCATTTACAAGGGTCTGTAACAAAATGGATAGTACGAGGAAAGCTCTAATGCTATGGAGTGAAGAGAAGTTCGCCGGACTGAAGAAACGGATTGAAGAGGTGAGAGGTAGACTAGCCATGTTCTACGACACTTCTCTCTCTGCTCCGGCGCATGAGGCAAAGATGAGGCTGGATGCGGAACTCAATGAACTGCTGCAGCAGGAACAATTGTTCTGGATGCAACGAGCCAAAGTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

194

Amino Acids

23.29

Weight (kDa)

10.17

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 454
AccII CGCG 1 cut(s) 330
AciI CCGC 4 cut(s) 293, 328, 330, 521
AcuI CTGAAG 1 cut(s) 446
AfaI GTAC 2 cut(s) 48, 379
AfiI CCNNNNNNNGG 4 cut(s) 33, 56, 163, 214
AgsI TTSAA 2 cut(s) 272, 440
AjnI CCWGG 1 cut(s) 210
AloI GAACNNNNNNTCC 2 cut(s) 539, 571
AluBI AGCT 2 cut(s) 66, 389
AluI AGCT 2 cut(s) 66, 389
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 538, 541
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 228, 496
AspS9I GGNCC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 344, 457
BbvI GCAGC 2 cut(s) 525, 553
BccI CCATC 3 cut(s) 212, 311, 315
BciT130I CCWGG 1 cut(s) 212
BclI TGATCA 1 cut(s) 193
BfaI CTAG 3 cut(s) 63, 183, 458
BfmI CTRYAG 1 cut(s) 539
BfoI RGCGCY 1 cut(s) 229
BisI GCNGC 3 cut(s) 328, 539, 542
BlsI GCNGC 3 cut(s) 329, 540, 543
Bme1390I CCNGG 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 49, 508, 552
BplI GAGNNNNNCTC 2 cut(s) 373, 405
BpmI CTGGAG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 124
BsaJI CCNNGG 2 cut(s) 50, 328
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 316, 346
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 56, 163, 214
Bse8I GATNNNNATC 1 cut(s) 124
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 50, 328
BseGI GGATG 6 cut(s) 10, 204, 322, 326, 523, 567
BseJI GATNNNNATC 1 cut(s) 124
BseLI CCNNNNNNNGG 4 cut(s) 33, 56, 163, 214
BseMII CTCAG 1 cut(s) 298
BseXI GCAGC 2 cut(s) 525, 553
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 61
BsiSI CCGG 3 cut(s) 301, 420, 491
BslI CCNNNNNNNGG 4 cut(s) 33, 56, 163, 214
BsnI GGCC 1 cut(s) 61
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 4 cut(s) 293, 328, 330, 521
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 1 cut(s) 326
BspMAI CTGCAG 1 cut(s) 543
BssECI CCNNGG 2 cut(s) 50, 328
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 2 cut(s) 402, 435
BstDEI CTNAG 2 cut(s) 162, 284
BstDSI CCRYGG 1 cut(s) 328
BstENI CCTNNNNNAGG 3 cut(s) 54, 161, 212
BstF5I GGATG 6 cut(s) 10, 204, 322, 326, 523, 567
BstFNI CGCG 1 cut(s) 330
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 2 cut(s) 228, 496
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 336, 500
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 525, 553
BstXI CCANNNNNNTGG 1 cut(s) 211
BsuRI GGCC 1 cut(s) 61
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 6 cut(s) 10, 204, 322, 326, 523, 567
BtsI GCAGTG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
CfoI GCGC 2 cut(s) 228, 496
Cfr13I GGNCC 1 cut(s) 59
Cfr42I CCGCGG 1 cut(s) 331
Csp6I GTAC 2 cut(s) 47, 378
CviAII CATG 3 cut(s) 44, 463, 497
CviJI RGCY 9 cut(s) 61, 66, 167, 283, 327, 389, 461, 514, 572
CviKI_1 RGCY 9 cut(s) 61, 66, 167, 283, 327, 389, 461, 514, 572
CviQI GTAC 2 cut(s) 47, 378
DdeI CTNAG 2 cut(s) 162, 284
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 402, 435
EarI CTCTTC 2 cut(s) 402, 435
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 50
Eco57I CTGAAG 1 cut(s) 446
EcoNI CCTNNNNNAGG 3 cut(s) 54, 161, 212
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 3 cut(s) 47, 466, 500
FaiI YATR 6 cut(s) 45, 71, 231, 400, 464, 498
FatI CATG 3 cut(s) 43, 462, 496
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 328, 539, 542
FokI GGATG 6 cut(s) 17, 191, 329, 333, 530, 574
Fsp4HI GCNGC 3 cut(s) 328, 539, 542
FspBI CTAG 3 cut(s) 63, 183, 458
GlaI GCGC 2 cut(s) 227, 495
GluI GCNGC 3 cut(s) 328, 539, 542
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 1 cut(s) 61
HapII CCGG 3 cut(s) 301, 420, 491
HhaI GCGC 2 cut(s) 228, 496
Hin1II CATG 3 cut(s) 47, 466, 500
Hin6I GCGC 2 cut(s) 226, 494
HinP1I GCGC 2 cut(s) 226, 494
HinfI GANTC 2 cut(s) 120, 261
HpaII CCGG 3 cut(s) 301, 420, 491
HphI GGTGA 2 cut(s) 344, 457
Hpy166II GTNNAC 1 cut(s) 455
Hpy188III TCNNGA 2 cut(s) 14, 559
Hpy8I GTNNAC 1 cut(s) 455
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 40, 541, 565
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 500
HpyF3I CTNAG 2 cut(s) 162, 284
Hsp92II CATG 3 cut(s) 47, 466, 500
HspAI GCGC 2 cut(s) 226, 494
Ksp22I TGATCA 1 cut(s) 193
KspI CCGCGG 1 cut(s) 331
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 2 cut(s) 324, 493
Lsp1109I GCAGC 2 cut(s) 525, 553
LweI GCATC 3 cut(s) 49, 508, 552
MaeI CTAG 3 cut(s) 63, 183, 458
MaeIII GTNAC 3 cut(s) 14, 341, 362
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 5 cut(s) 262, 265, 419, 439, 452
MfeI CAATTG 1 cut(s) 551
MluCI AATT 3 cut(s) 81, 172, 551
MmeI TCCRAC 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 2 cut(s) 176, 219
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 3 cut(s) 301, 420, 491
MspR9I CCNGG 1 cut(s) 212
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 336, 500
NdeII GATC 1 cut(s) 193
NlaIII CATG 3 cut(s) 47, 466, 500
NlaIV GGNNCC 1 cut(s) 326
NmuCI GTSAC 2 cut(s) 14, 341
PcsI WCGNNNNNNNCGW 2 cut(s) 134, 241
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 120, 261
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 3 cut(s) 329, 540, 543
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 59
PstI CTGCAG 1 cut(s) 543
RsaI GTAC 2 cut(s) 48, 379
RsaNI GTAC 2 cut(s) 47, 378
SacII CCGCGG 1 cut(s) 331
SaqAI TTAA 2 cut(s) 176, 219
SatI GCNGC 3 cut(s) 328, 539, 542
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 212
SetI ASST 8 cut(s) 52, 68, 91, 108, 219, 391, 447, 454
SfaNI GCATC 3 cut(s) 49, 508, 552
SfcI CTRYAG 1 cut(s) 539
Sfr303I CCGCGG 1 cut(s) 331
SgrBI CCGCGG 1 cut(s) 331
Sse9I AATT 3 cut(s) 81, 172, 551
SsiI CCGC 4 cut(s) 293, 328, 330, 521
SspMI CTAG 3 cut(s) 63, 183, 458
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 50
TaqI TCGA 1 cut(s) 128
TasI AATT 3 cut(s) 81, 172, 551
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 2 cut(s) 120, 261
Tru1I TTAA 2 cut(s) 176, 219
Tru9I TTAA 2 cut(s) 176, 219
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 2 cut(s) 14, 341
TseI GCWGC 2 cut(s) 538, 541
Tsp45I GTSAC 2 cut(s) 14, 341
TspDTI ATGAA 1 cut(s) 546
TspGWI ACGGA 2 cut(s) 253, 448
TspRI CASTG 1 cut(s) 346
XagI CCTNNNNNAGG 3 cut(s) 54, 161, 212
XmiI GTMKAC 1 cut(s) 454
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 3 cut(s) 63, 183, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.