Rh2AG364300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000619
Physical Location & Seq
Forward (+)
53965560 .. 53966036
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG364300.1

Sequence Viewer

Length: 477 bp
ATGGGTAATTTACCGTGGGTTGTGGGGGGAGATTATAATGAGATTTCTTCGGTCTCAGACAAAGTTGGTAGGGCTGTGAGAAGTTTAAGACAGATGGCGGGTCTTCAAGAGGCACTACAGTTTTGTGAGCTCGGGGAGTTTAAATTTGAAGGGCCTCAGTTTACTTGGAGGGTTAAGAGAGGGGGTGAAGAAGTCAAAATTCGGCTGGACAAGTTTACAGGAACGACTAGTTGGGAGAACATGTATCTGGCCTCAGTTATACATCATTTACACCCTTCAAAATCCGACCATGTTCCCATTCTTTTGGAAGTTAGAGAGCAGCCACGTTACAAAAAGAAAAGGAAAAAAAAGAGATTCAAGTTTGAGGAATTTTGGTTGCATGAGGAGATGTGTAAAAAGATGGTGAAGTTAGGGTGGGAAGGAGTGTCTGGTAATGATCCTTTTCTTAAAACTGTGGAACAGGATTCAAAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

158

Amino Acids

18.5

Weight (kDa)

9.32

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 36
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 3 cut(s) 143, 198, 368
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 5 cut(s) 107, 149, 279, 358, 468
AhlI ACTAGT 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 214, 246
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 1 cut(s) 431
Ama87I CYCGRG 1 cut(s) 131
AoxI GGCC 2 cut(s) 152, 249
ApeKI GCWGC 1 cut(s) 319
ApoI RAATTY 3 cut(s) 143, 198, 368
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 197, 415
AvaI CYCGRG 1 cut(s) 131
BanII GRGCYC 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 88, 394
BcoDI GTCTC 1 cut(s) 58
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 2 cut(s) 228, 475
BfmI CTRYAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 131
BmgT120I GGNCC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
BseDI CCNNGG 1 cut(s) 14
BseMII CTCAG 3 cut(s) 69, 170, 267
BseRI GAGGAG 1 cut(s) 398
BseXI GCAGC 1 cut(s) 331
BshFI GGCC 2 cut(s) 154, 251
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 2 cut(s) 154, 251
Bso31I GGTCTC 1 cut(s) 58
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 1 cut(s) 98
BspANI GGCC 2 cut(s) 154, 251
BspCNI CTCAG 3 cut(s) 68, 169, 266
BspPI GGATC 1 cut(s) 431
BspTNI GGTCTC 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 1 cut(s) 436
Bst4CI ACNGT 3 cut(s) 15, 120, 454
BstDEI CTNAG 3 cut(s) 55, 156, 253
BstDSI CCRYGG 1 cut(s) 14
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 436
BstNSI RCATGY 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 304
BsuRI GGCC 2 cut(s) 154, 251
BtgI CCRYGG 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 152
CviAII CATG 3 cut(s) 241, 290, 380
CviJI RGCY 6 cut(s) 74, 130, 154, 205, 251, 322
CviKI_1 RGCY 6 cut(s) 74, 130, 154, 205, 251, 322
DdeI CTNAG 3 cut(s) 55, 156, 253
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
DraI TTTAAA 1 cut(s) 142
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 58
Eco53kI GAGCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 131
EcoICRI GAGCTC 1 cut(s) 130
EcoO109I RGGNCCY 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 3 cut(s) 244, 293, 383
FaiI YATR 5 cut(s) 36, 242, 260, 291, 381
FatI CATG 3 cut(s) 240, 289, 379
FauI CCCGC 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 320
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 2 cut(s) 228, 475
GluI GCNGC 1 cut(s) 320
HaeIII GGCC 2 cut(s) 154, 251
Hin1II CATG 3 cut(s) 244, 293, 383
HinfI GANTC 2 cut(s) 354, 464
HphI GGTGA 2 cut(s) 197, 415
Hpy166II GTNNAC 2 cut(s) 162, 216
Hpy188I TCNGA 2 cut(s) 58, 286
Hpy188III TCNNGA 1 cut(s) 107
Hpy8I GTNNAC 2 cut(s) 162, 216
HpyAV CCTTC 3 cut(s) 143, 285, 413
HpyCH4III ACNGT 3 cut(s) 15, 120, 454
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 379
HpyF3I CTNAG 3 cut(s) 55, 156, 253
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 3 cut(s) 244, 293, 383
Kzo9I GATC 1 cut(s) 436
LpnPI CCDG 5 cut(s) 191, 204, 233, 414, 446
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 2 cut(s) 228, 475
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 326
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 3 cut(s) 39, 95, 200
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 4 cut(s) 7, 143, 198, 368
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 7 cut(s) 103, 162, 165, 173, 262, 358, 376
MseI TTAA 4 cut(s) 86, 141, 174, 447
NdeII GATC 1 cut(s) 436
NlaIII CATG 3 cut(s) 244, 293, 383
NspI RCATGY 1 cut(s) 244
PciI ACATGT 1 cut(s) 240
PfeI GAWTC 2 cut(s) 354, 464
PkrI GCNGC 1 cut(s) 321
PscI ACATGT 1 cut(s) 240
PsiI TTATAA 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 152
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 4 cut(s) 86, 141, 174, 447
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 1 cut(s) 152
SduI GDGCHC 1 cut(s) 132
SetI ASST 2 cut(s) 132, 328
SfcI CTRYAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 4 cut(s) 7, 143, 198, 368
SsiI CCGC 1 cut(s) 98
SspMI CTAG 2 cut(s) 228, 475
SstI GAGCTC 1 cut(s) 132
TaaI ACNGT 3 cut(s) 15, 120, 454
TaiI ACGT 1 cut(s) 328
TaqII GACCGA 1 cut(s) 40
TasI AATT 4 cut(s) 7, 143, 198, 368
TfiI GAWTC 2 cut(s) 354, 464
Tru1I TTAA 4 cut(s) 86, 141, 174, 447
Tru9I TTAA 4 cut(s) 86, 141, 174, 447
TseI GCWGC 1 cut(s) 319
XapI RAATTY 3 cut(s) 143, 198, 368
XceI RCATGY 1 cut(s) 244
XspI CTAG 2 cut(s) 228, 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.