FvH4_3g32551

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000619
Physical Location & Seq
Forward (+)
27843402 .. 27844108
707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32551.t1

Sequence Viewer

Length: 591 bp
ATGCAGCCGAATGAATCAGATCACCTCCCGATTATTCTAGAAGTTCGGAAAAGGAAGAAGCGTCGGCGTCCAAAACGGAGACGTTTCAGATTGGAGGAGTTCTGGTTGAGAGAGGAAGATTGTAGACAAGTGGTGGAGTCTGGTTGGGGGAGTGGGACTGGTAGATGTCCATACTCCAAACTTCGTAACAAAATCCAAAATACTAGGGACTTGCTACTGAGTTGGAGTAAGGAAAGGTTCGGTTCGCTTAGAGAGACGATCGCCAGGACCAGGGAGCGTCTGGGAGAGCTGTATGAGGAGGGACAACCGTCTTTCTCTGACGAGGTCCGAGGGGAGTTGGAGAAGCAGCTTCGAGAGTTACTCCAGAAGGAGCAAGCTTTCTGGCAGCAGCGCTCTAGGGTGTTATGGTTAGCTGAAGGGGATCTAAATACGAAATATTTCCACCAGAAGGCGAGCAATCGGAGGAAGAAGAATACTTTGAGGGGGCTCTATAATAGTGATGGTTATCACGGAGGAGGTAAACCAGTCTCTGATGAGGGAGGTTACGGCAGAAGAAGTTTGGAGAGCCTTGAAGCAAATACACCCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

197

Amino Acids

23.22

Weight (kDa)

9.99

Isoelectric Point (pI)

64.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 124
AclWI GGATC 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 67
AfeI AGCGCT 1 cut(s) 392
AfiI CCNNNNNNNGG 2 cut(s) 270, 448
AgsI TTSAA 1 cut(s) 572
AjnI CCWGG 2 cut(s) 263, 269
AluBI AGCT 4 cut(s) 289, 349, 377, 413
AluI AGCT 4 cut(s) 289, 349, 377, 413
Alw26I GTCTC 3 cut(s) 73, 248, 532
AlwI GGATC 1 cut(s) 429
AlwNI CAGNNNCTG 1 cut(s) 530
Aor51HI AGCGCT 1 cut(s) 392
ApeKI GCWGC 4 cut(s) 4, 346, 385, 388
Asp700I GAANNNNTTC 1 cut(s) 437
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 267, 325
AsuHPI GGTGA 1 cut(s) 14
AvaII GGWCC 2 cut(s) 267, 325
BanII GRGCYC 1 cut(s) 489
BbvI GCAGC 4 cut(s) 16, 358, 397, 400
BccI CCATC 1 cut(s) 494
BceAI ACGGC 1 cut(s) 562
BciT130I CCWGG 2 cut(s) 265, 271
BcoDI GTCTC 3 cut(s) 73, 248, 532
BfaI CTAG 3 cut(s) 38, 204, 396
BfoI RGCGCY 1 cut(s) 394
BisI GCNGC 4 cut(s) 5, 347, 386, 389
BlsI GCNGC 4 cut(s) 6, 348, 387, 390
Bme1390I CCNGG 2 cut(s) 265, 271
Bme18I GGWCC 2 cut(s) 267, 325
BmgT120I GGNCC 2 cut(s) 267, 325
BmrFI CCNGG 2 cut(s) 265, 271
BoxI GACNNNNGTC 1 cut(s) 307
BplI GAGNNNNNCTC 2 cut(s) 345, 377
BpmI CTGGAG 1 cut(s) 347
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 2 cut(s) 270, 328
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 270, 448
Bse1I ACTGG 2 cut(s) 163, 524
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 2 cut(s) 265, 271
BseDI CCNNGG 2 cut(s) 270, 328
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 2 cut(s) 270, 448
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 2 cut(s) 163, 524
BseRI GAGGAG 3 cut(s) 110, 311, 528
BseXI GCAGC 4 cut(s) 16, 358, 397, 400
Bsh1285I CGRYCG 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 261
BslFI GGGAC 3 cut(s) 169, 221, 315
BslI CCNNNNNNNGG 2 cut(s) 270, 448
BsmAI GTCTC 3 cut(s) 73, 248, 532
BsmBI CGTCTC 2 cut(s) 73, 248
BsmFI GGGAC 3 cut(s) 169, 221, 315
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 3 cut(s) 19, 258, 421
BspCNI CTCAG 1 cut(s) 210
BspPI GGATC 1 cut(s) 429
BsrI ACTGG 2 cut(s) 163, 524
BssECI CCNNGG 2 cut(s) 270, 328
BssMI GATC 3 cut(s) 19, 258, 421
BssNI GRCGYC 1 cut(s) 67
Bst2UI CCWGG 2 cut(s) 265, 271
Bst4CI ACNGT 1 cut(s) 309
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 2 cut(s) 375, 454
BstDEI CTNAG 2 cut(s) 218, 248
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 3 cut(s) 22, 261, 424
BstMAI GTCTC 3 cut(s) 73, 248, 532
BstMBI GATC 3 cut(s) 19, 258, 421
BstMCI CGRYCG 1 cut(s) 261
BstNI CCWGG 2 cut(s) 265, 271
BstPAI GACNNNNGTC 1 cut(s) 307
BstSCI CCNGG 2 cut(s) 263, 269
BstV1I GCAGC 4 cut(s) 16, 358, 397, 400
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
Cac8I GCNNGC 2 cut(s) 375, 454
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 267, 325
CseI GACGC 3 cut(s) 50, 56, 266
CviJI RGCY 7 cut(s) 7, 289, 349, 377, 413, 487, 567
CviKI_1 RGCY 7 cut(s) 7, 289, 349, 377, 413, 487, 567
DdeI CTNAG 2 cut(s) 218, 248
DpnI GATC 3 cut(s) 21, 260, 423
DpnII GATC 3 cut(s) 19, 258, 421
Eco24I GRGCYC 1 cut(s) 489
Eco47I GGWCC 2 cut(s) 267, 325
Eco47III AGCGCT 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 263, 269
EcoT38I GRGCYC 1 cut(s) 489
Esp3I CGTCTC 2 cut(s) 73, 248
FaiI YATR 4 cut(s) 172, 294, 406, 492
FaqI GGGAC 3 cut(s) 169, 221, 315
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 5, 347, 386, 389
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 4 cut(s) 5, 347, 386, 389
FspBI CTAG 3 cut(s) 38, 204, 396
GlaI GCGC 1 cut(s) 392
GluI GCNGC 4 cut(s) 5, 347, 386, 389
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 1 cut(s) 394
HgaI GACGC 3 cut(s) 50, 56, 266
HhaI GCGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 2 cut(s) 14, 137
HphI GGTGA 1 cut(s) 14
Hpy166II GTNNAC 2 cut(s) 125, 521
Hpy188I TCNGA 7 cut(s) 19, 48, 89, 319, 329, 462, 532
Hpy188III TCNNGA 4 cut(s) 28, 38, 353, 364
Hpy8I GTNNAC 2 cut(s) 125, 521
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 3 cut(s) 361, 410, 442
HpyCH4III ACNGT 1 cut(s) 309
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 218, 248
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 1 cut(s) 67
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 19, 258, 421
LmnI GCTCC 2 cut(s) 274, 370
Lsp1109I GCAGC 4 cut(s) 16, 358, 397, 400
MaeI CTAG 3 cut(s) 38, 204, 396
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 3 cut(s) 185, 357, 542
MalI GATC 3 cut(s) 21, 260, 423
MboI GATC 3 cut(s) 19, 258, 421
MboII GAAGA 5 cut(s) 67, 128, 478, 481, 564
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 489
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 2 cut(s) 203, 318
MroXI GAANNNNTTC 1 cut(s) 437
MspR9I CCNGG 2 cut(s) 265, 271
MvaI CCWGG 2 cut(s) 265, 271
NdeII GATC 3 cut(s) 19, 258, 421
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 4 cut(s) 6, 348, 387, 390
Ple19I CGATCG 1 cut(s) 261
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PshAI GACNNNNGTC 1 cut(s) 307
Psp6I CCWGG 2 cut(s) 263, 269
PspGI CCWGG 2 cut(s) 263, 269
PspPI GGNCC 2 cut(s) 267, 325
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 323
PvuI CGATCG 1 cut(s) 261
SatI GCNGC 4 cut(s) 5, 347, 386, 389
Sau3AI GATC 3 cut(s) 19, 258, 421
Sau96I GGNCC 2 cut(s) 267, 325
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 265, 271
SduI GDGCHC 1 cut(s) 489
SinI GGWCC 2 cut(s) 267, 325
SspI AATATT 1 cut(s) 437
SspMI CTAG 3 cut(s) 38, 204, 396
StyD4I CCNGG 2 cut(s) 263, 269
TaaI ACNGT 1 cut(s) 309
TaiI ACGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 352
TfiI GAWTC 1 cut(s) 14
TseI GCWGC 4 cut(s) 4, 346, 385, 388
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 2 cut(s) 91, 525
Tth111I GACNNNGTC 1 cut(s) 323
VpaK11BI GGWCC 2 cut(s) 267, 325
XbaI TCTAGA 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 3 cut(s) 38, 204, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.