Rmu_sc0032187.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032187.1
OG0000619
Physical Location & Seq
Reverse (-)
5321 .. 5719
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032187.1_g000002.1.cds

Sequence Viewer

Length: 399 bp
atgaatgtattatgctggaactgtcaagggattgagaacccttggacagttcgggggctaaaagggatcttatccctcaaacttcccaacatcgtcttcttaagtgacatgagaagtaccactgatgagatggaggaggtgtgccggctggtggggtggaggaatttttgggcggtggactgtcagtttatgcaaaagaagcataataagggtgtgagtaggactggaggtttgtgtttaatgtggagcaatgatattaacgttgcggtacaatctttctcagataatcatattgaagttgtgataggtgttgttgatgaccccaagaggtggaggtttataagtttctattctacggaaagcctaaggtggaagacagacatttgtcttgggcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

132

Amino Acids

15.3

Weight (kDa)

7.61

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AccB7I CCANNNNNTGG 1 cut(s) 330
AciI CCGC 2 cut(s) 173, 266
AclI AACGTT 1 cut(s) 261
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 2 cut(s) 118, 270
AfiI CCNNNNNNNGG 2 cut(s) 151, 330
AflII CTTAAG 1 cut(s) 100
AgsI TTSAA 1 cut(s) 296
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AlwI GGATC 1 cut(s) 74
ApoI RAATTY 1 cut(s) 163
ArsI GACNNNNNNTTYG 2 cut(s) 214, 246
AxyI CCTNAGG 1 cut(s) 365
BbsI GAAGAC 2 cut(s) 88, 380
BccI CCATC 1 cut(s) 124
BfrI CTTAAG 1 cut(s) 100
BoxI GACNNNNGTC 1 cut(s) 384
BpiI GAAGAC 2 cut(s) 88, 380
BpmI CTGGAG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 330
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 229
Bse21I CCTNAGG 1 cut(s) 365
Bse3DI GCAATG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 41
BseLI CCNNNNNNNGG 2 cut(s) 151, 330
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 149
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 151, 330
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 2 cut(s) 173, 266
BspCNI CTCAG 1 cut(s) 293
BspPI GGATC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 41
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 41
Bst4CI ACNGT 3 cut(s) 23, 49, 182
BstAFI CTTAAG 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 280, 365
BstKTI GATC 1 cut(s) 69
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 384
BstV2I GAAGAC 2 cut(s) 88, 380
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
Bsu36I CCTNAGG 1 cut(s) 365
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 146
Cfr10I RCCGGY 1 cut(s) 144
Csp6I GTAC 2 cut(s) 117, 269
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 58, 148, 363
CviKI_1 RGCY 3 cut(s) 58, 148, 363
CviQI GTAC 2 cut(s) 117, 269
DdeI CTNAG 2 cut(s) 280, 365
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 41
Eco81I CCTNAGG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 13, 110, 191, 204, 291, 341
FatI CATG 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 246
HapII CCGG 1 cut(s) 145
Hin1II CATG 1 cut(s) 112
HpaII CCGG 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 1 cut(s) 283
Hpy8I GTNNAC 1 cut(s) 178
HpyCH4III ACNGT 3 cut(s) 23, 49, 182
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 280, 365
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 1 cut(s) 112
KroI GCCGGC 1 cut(s) 144
KroNI GCCGGC 1 cut(s) 146
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 3 cut(s) 134, 158, 210
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 88, 385
MflI RGATCY 1 cut(s) 66
MluCI AATT 1 cut(s) 163
MnlI CCTC 7 cut(s) 86, 127, 130, 153, 221, 321, 327
MroNI GCCGGC 1 cut(s) 144
MseI TTAA 3 cut(s) 101, 239, 258
MspCI CTTAAG 1 cut(s) 100
MspI CCGG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 199
NaeI GCCGGC 1 cut(s) 146
NdeII GATC 1 cut(s) 66
NgoMIV GCCGGC 1 cut(s) 144
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 104
PdiI GCCGGC 1 cut(s) 146
PflMI CCANNNNNTGG 1 cut(s) 330
PshAI GACNNNNGTC 1 cut(s) 384
PsiI TTATAA 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 261
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 2 cut(s) 118, 270
RsaNI GTAC 2 cut(s) 117, 269
SaqAI TTAA 3 cut(s) 101, 239, 258
Sau3AI GATC 1 cut(s) 66
SetI ASST 7 cut(s) 141, 232, 264, 310, 332, 338, 371
SgeI CNNG 9 cut(s) 28, 38, 54, 65, 121, 157, 161, 237, 337
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 1 cut(s) 163
SsiI CCGC 2 cut(s) 173, 266
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 23, 49, 182
TaiI ACGT 1 cut(s) 264
TasI AATT 1 cut(s) 163
Tru1I TTAA 3 cut(s) 101, 239, 258
Tru9I TTAA 3 cut(s) 101, 239, 258
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 330
Vha464I CTTAAG 1 cut(s) 100
XapI RAATTY 1 cut(s) 163
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.