Rmu_sc0018068.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018068.1
OG0000619
Physical Location & Seq
Reverse (-)
2106 .. 3606
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018068.1_g000002.1.cds

Sequence Viewer

Length: 525 bp
atgaagcccagaaggctggagaagtcgccggcagcgaggaaccgcgacggaggcagaaacaacccagaaaccaaaatgtcaaaactcgatctaattggaaaactaatcatacttggaactcgccggagaaagctcggacctttcaccgtcgattcttctacctcgtcaagtgcatggacgatccaaggctacagggttgtaggcgatggagagatgaagctattgcccatggagttgattaaagctctggggaaagatgactttggtccatgggttgttgggggtgactttaacggaatcttatctttcctagagaaacatgggggccctagaaggggtgaaaggcagatgaagggtttcagggaggctttgttggaatgcagtttgaaggacttgtactatgttggacccgagttcacctggaggggcaacaaaaatggagttgagattaaagagtggcttgaccgctttgtggctacctctagctggctgagggggttttcggcatctcgggtttctcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

174

Amino Acids

19.62

Weight (kDa)

10.04

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AciI CCGC 2 cut(s) 43, 466
AclWI GGATC 1 cut(s) 175
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 4 cut(s) 334, 335, 472, 486
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 1 cut(s) 419
AluBI AGCT 4 cut(s) 133, 220, 245, 486
AluI AGCT 4 cut(s) 133, 220, 245, 486
AlwI GGATC 1 cut(s) 175
Ama87I CYCGRG 2 cut(s) 410, 510
AoxI GGCC 1 cut(s) 325
ApaI GGGCCC 1 cut(s) 329
ApeKI GCWGC 1 cut(s) 32
Asp700I GAANNNNTTC 1 cut(s) 356
AspS9I GGNCC 5 cut(s) 137, 266, 325, 326, 407
AsuHPI GGTGA 4 cut(s) 136, 296, 350, 409
AvaI CYCGRG 2 cut(s) 410, 510
AvaII GGWCC 3 cut(s) 137, 266, 407
BaeGI GKGCMC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 329
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbvCI CCTCAGC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 421
BfaI CTAG 3 cut(s) 311, 330, 483
BfmI CTRYAG 1 cut(s) 190
BglI GCCNNNNNGGC 1 cut(s) 13
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 3 cut(s) 137, 266, 407
BmeT110I CYCGRG 2 cut(s) 410, 510
BmgT120I GGNCC 5 cut(s) 137, 266, 325, 326, 407
BmiI GGNNCC 4 cut(s) 41, 326, 327, 409
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 515
BoxI GACNNNNGTC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 38, 442
Bpu10I CCTNAGC 1 cut(s) 491
BsaJI CCNNGG 3 cut(s) 184, 228, 269
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 334, 335, 472, 486
Bse118I RCCGGY 1 cut(s) 28
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 184, 228, 269
BseLI CCNNNNNNNGG 4 cut(s) 334, 335, 472, 486
BseMII CTCAG 1 cut(s) 482
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 327
BsiHKCI CYCGRG 2 cut(s) 410, 510
BsiSI CCGG 2 cut(s) 29, 124
BslI CCNNNNNNNGG 4 cut(s) 334, 335, 472, 486
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 1 cut(s) 327
BsoBI CYCGRG 2 cut(s) 410, 510
Bsp120I GGGCCC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 88, 180
Bsp19I CCATGG 2 cut(s) 228, 269
BspACI CCGC 2 cut(s) 43, 466
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 483
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 4 cut(s) 41, 326, 327, 409
BspPI GGATC 1 cut(s) 175
BsrFI RCCGGY 1 cut(s) 28
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 184, 228, 269
BssMI GATC 2 cut(s) 88, 180
BssT1I CCWWGG 3 cut(s) 184, 228, 269
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 30, 488
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 2 cut(s) 228, 269
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 2 cut(s) 91, 183
BstMBI GATC 2 cut(s) 88, 180
BstMWI GCNNNNNNNGC 2 cut(s) 13, 51
BstNI CCWGG 1 cut(s) 421
BstPAI GACNNNNGTC 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 190
BstSLI GKGCMC 1 cut(s) 329
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 1 cut(s) 327
BtgI CCRYGG 2 cut(s) 228, 269
BtgZI GCGATG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 30, 488
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 5 cut(s) 137, 266, 325, 326, 407
Csp6I GTAC 1 cut(s) 397
CviAII CATG 4 cut(s) 174, 229, 270, 320
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 491
DpnI GATC 2 cut(s) 90, 182
DpnII GATC 2 cut(s) 88, 180
Eco130I CCWWGG 3 cut(s) 184, 228, 269
Eco24I GRGCYC 1 cut(s) 329
Eco47I GGWCC 3 cut(s) 137, 266, 407
Eco88I CYCGRG 2 cut(s) 410, 510
EcoO109I RGGNCCY 2 cut(s) 325, 326
EcoRII CCWGG 1 cut(s) 419
EcoT14I CCWWGG 3 cut(s) 184, 228, 269
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 3 cut(s) 184, 228, 269
FaeI CATG 4 cut(s) 177, 232, 273, 323
FaiI YATR 6 cut(s) 110, 175, 230, 271, 321, 402
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 4 cut(s) 173, 228, 269, 319
Fnu4HI GCNGC 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 3 cut(s) 311, 330, 483
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 2 cut(s) 38, 442
HaeIII GGCC 1 cut(s) 327
HapII CCGG 2 cut(s) 29, 124
Hin1II CATG 4 cut(s) 177, 232, 273, 323
HinfI GANTC 2 cut(s) 152, 297
HpaII CCGG 2 cut(s) 29, 124
HphI GGTGA 4 cut(s) 136, 296, 350, 409
Hpy166II GTNNAC 1 cut(s) 417
Hpy188I TCNGA 1 cut(s) 137
Hpy8I GTNNAC 1 cut(s) 417
Hpy99I CGWCG 2 cut(s) 50, 152
HpyAV CCTTC 4 cut(s) 6, 327, 346, 382
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 2 cut(s) 173, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 51
HpyF3I CTNAG 1 cut(s) 491
Hsp92II CATG 4 cut(s) 177, 232, 273, 323
KroI GCCGGC 1 cut(s) 28
KroNI GCCGGC 1 cut(s) 30
Kzo9I GATC 2 cut(s) 88, 180
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 1 cut(s) 515
MaeI CTAG 3 cut(s) 311, 330, 483
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 90, 182
MboI GATC 2 cut(s) 88, 180
MboII GAAGA 1 cut(s) 147
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 354, 385
MnlI CCTC 7 cut(s) 30, 44, 172, 358, 417, 486, 490
MroNI GCCGGC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 3 cut(s) 240, 291, 450
MspI CCGG 2 cut(s) 29, 124
MspR9I CCNGG 1 cut(s) 421
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 13, 51
NaeI GCCGGC 1 cut(s) 30
NcoI CCATGG 2 cut(s) 228, 269
NdeII GATC 2 cut(s) 88, 180
NgoMIV GCCGGC 1 cut(s) 28
NlaIII CATG 4 cut(s) 177, 232, 273, 323
NlaIV GGNNCC 4 cut(s) 41, 326, 327, 409
NmuCI GTSAC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 32
PctI GAATGC 1 cut(s) 383
PdiI GCCGGC 1 cut(s) 30
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 2 cut(s) 152, 297
PkrI GCNGC 1 cut(s) 34
PshAI GACNNNNGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 419
PspGI CCWGG 1 cut(s) 419
PspN4I GGNNCC 4 cut(s) 41, 326, 327, 409
PspOMI GGGCCC 1 cut(s) 325
PspPI GGNCC 5 cut(s) 137, 266, 325, 326, 407
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 240, 291, 450
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 88, 180
Sau96I GGNCC 5 cut(s) 137, 266, 325, 326, 407
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 1 cut(s) 329
SetI ASST 8 cut(s) 135, 142, 164, 222, 247, 422, 482, 488
SfaNI GCATC 1 cut(s) 515
SfcI CTRYAG 1 cut(s) 190
SinI GGWCC 3 cut(s) 137, 266, 407
Sse9I AATT 1 cut(s) 93
SsiI CCGC 2 cut(s) 43, 466
SspMI CTAG 3 cut(s) 311, 330, 483
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 3 cut(s) 184, 228, 269
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 87, 150
TasI AATT 1 cut(s) 93
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 2 cut(s) 152, 297
Tru1I TTAA 3 cut(s) 240, 291, 450
Tru9I TTAA 3 cut(s) 240, 291, 450
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 3 cut(s) 17, 230, 365
TspGWI ACGGA 2 cut(s) 63, 309
VpaK11BI GGWCC 3 cut(s) 137, 266, 407
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 3 cut(s) 311, 330, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.