Rh7CG520500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000619
Physical Location & Seq
Reverse (-)
69980261 .. 69981291
1031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG520500.1

Sequence Viewer

Length: 450 bp
ATGCTTGGTAGTAGCTTTCACATGTGTAGCACTAGCGGAGCAAAAGATTCCTTTTCTGGAAGGAGTTGCGGTGCTAGTGATCAGAATAGGTGGAGATTTACAGGGTTCTATGGCCATCCGAAGGTGGAACTACGTTATCAAACGTGGGAGCTGTTATTGATACTAGTACAGAACTATGTTGGGCCATGGCTTGTAGGTGGTGATGTGAATGAGATTCTTCGGTTTTCAGAGAAAGAAGGCGAGCCTTCTCGCTGCCCTAAACAAATGGAGTTATTTCAGAGGTGTGTCAATCGGTGCAGTTTACATGATTTAAATTTCGTTGGTCCTCCTTTTACTTGGAGAGGGAAGGAAAATGGAGAAGAGATTAAAGTAAGGCTTGATATATTTTTGGCATCAAATGACTGGTTTGGGATGTTTCCTGCATCAGGTGTCGCATCTCAGTCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

149

Amino Acids

16.92

Weight (kDa)

6.82

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 69
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 313
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 121, 425
AflIII ACRYGT 1 cut(s) 21
AhlI ACTAGT 1 cut(s) 163
AluBI AGCT 2 cut(s) 15, 151
AluI AGCT 2 cut(s) 15, 151
AoxI GGCC 2 cut(s) 112, 182
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 182, 323
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 114
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 123
BclI TGATCA 1 cut(s) 79
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 3 cut(s) 33, 75, 164
BisI GCNGC 1 cut(s) 253
BlsI GCNGC 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 323
BmgT120I GGNCC 2 cut(s) 182, 323
BmsI GCATC 3 cut(s) 401, 431, 443
BsaJI CCNNGG 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 425
Bse1I ACTGG 1 cut(s) 407
BseDI CCNNGG 1 cut(s) 185
BseGI GGATG 2 cut(s) 115, 417
BseLI CCNNNNNNNGG 2 cut(s) 121, 425
BseNI ACTGG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 316
BshFI GGCC 2 cut(s) 114, 184
BslI CCNNNNNNNGG 2 cut(s) 121, 425
BsnI GGCC 2 cut(s) 114, 184
Bsp143I GATC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 185
BspACI CCGC 2 cut(s) 36, 69
BspANI GGCC 2 cut(s) 114, 184
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 1 cut(s) 438
BstDSI CCRYGG 1 cut(s) 185
BstENI CCTNNNNNAGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 115, 417
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstNSI RCATGY 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 239
BsuRI GGCC 2 cut(s) 114, 184
BtgI CCRYGG 1 cut(s) 185
BtsCI GGATG 2 cut(s) 115, 417
Cac8I GCNNGC 1 cut(s) 242
Cfr13I GGNCC 2 cut(s) 182, 323
Csp6I GTAC 1 cut(s) 167
CviAII CATG 3 cut(s) 22, 186, 305
CviJI RGCY 7 cut(s) 15, 114, 151, 184, 190, 244, 376
CviKI_1 RGCY 7 cut(s) 15, 114, 151, 184, 190, 244, 376
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 1 cut(s) 438
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 323
EcoNI CCTNNNNNAGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 185
ErhI CCWWGG 1 cut(s) 185
FaeI CATG 3 cut(s) 25, 189, 308
FaiI YATR 6 cut(s) 23, 111, 177, 187, 306, 383
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FatI CATG 3 cut(s) 21, 185, 304
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 253
FokI GGATG 2 cut(s) 102, 424
Fsp4HI GCNGC 1 cut(s) 253
FspBI CTAG 3 cut(s) 33, 75, 164
GluI GCNGC 1 cut(s) 253
HaeIII GGCC 2 cut(s) 114, 184
Hin1II CATG 3 cut(s) 25, 189, 308
HinfI GANTC 2 cut(s) 47, 214
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 4 cut(s) 84, 120, 229, 279
Hpy188III TCNNGA 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 5 cut(s) 54, 115, 230, 255, 340
HpyCH4IV ACGT 2 cut(s) 133, 143
HpyCH4V TGCA 2 cut(s) 297, 422
HpyF3I CTNAG 1 cut(s) 438
HpySE526I ACGT 2 cut(s) 133, 143
Hsp92II CATG 3 cut(s) 25, 189, 308
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 38, 148
LpnPI CCDG 5 cut(s) 42, 87, 388, 411, 432
Lsp1109I GCAGC 1 cut(s) 239
LweI GCATC 3 cut(s) 401, 431, 443
MaeI CTAG 3 cut(s) 33, 75, 164
MaeII ACGT 2 cut(s) 133, 143
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 209, 371
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 114
MnlI CCTC 3 cut(s) 273, 335, 336
Mox20I TGGCCA 1 cut(s) 114
MscI TGGCCA 1 cut(s) 114
MseI TTAA 2 cut(s) 311, 366
Msp20I TGGCCA 1 cut(s) 114
NcoI CCATGG 1 cut(s) 185
NdeII GATC 1 cut(s) 79
NlaIII CATG 3 cut(s) 25, 189, 308
NspI RCATGY 1 cut(s) 25
PciI ACATGT 1 cut(s) 21
PfeI GAWTC 2 cut(s) 47, 214
PkrI GCNGC 1 cut(s) 254
PscI ACATGT 1 cut(s) 21
PspPI GGNCC 2 cut(s) 182, 323
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 311, 366
SatI GCNGC 1 cut(s) 253
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 182, 323
SetI ASST 9 cut(s) 17, 92, 126, 136, 146, 153, 199, 284, 430
SfaNI GCATC 3 cut(s) 401, 431, 443
SinI GGWCC 1 cut(s) 323
SmiI ATTTAAAT 1 cut(s) 312
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 1 cut(s) 313
SsiI CCGC 2 cut(s) 36, 69
SspMI CTAG 3 cut(s) 33, 75, 164
StyI CCWWGG 1 cut(s) 185
SwaI ATTTAAAT 1 cut(s) 312
TaiI ACGT 2 cut(s) 136, 146
TasI AATT 1 cut(s) 313
TatI WGTACW 1 cut(s) 166
TfiI GAWTC 2 cut(s) 47, 214
Tru1I TTAA 2 cut(s) 311, 366
Tru9I TTAA 2 cut(s) 311, 366
TseI GCWGC 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 323
XagI CCTNNNNNAGG 1 cut(s) 423
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 25
XspI CTAG 3 cut(s) 33, 75, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.