Rmu_sc0001940.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001940.1
OG0000619
Physical Location & Seq
Reverse (-)
33587 .. 34312
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001940.1_g000010.1.cds

Sequence Viewer

Length: 726 bp
atggctacccgggaatggacggacattttcccggcgtcctgggttaccaacttgaaaccttcaaagtcagatcaccttccgattctgttggaggtatgctctactagaccaaagaagaggaggaaaaagaagagtttttgttttgaagctcattggttacaagatgaagaatgtgccagcgttgtgaaaagaggttgggaagacgtggagggcagagatccttttcaaacagtttgtttaaagattgagcacactagacaagctttgtgggaatggagcaagcataagtttgggaatttgaaggctgagattgagcgcacaagggaaaaactggttgtgtattttgataaatcattttctgcataccctgaagaagaatgtatggaactggaagccaggctaaatgacttattggttcatcaacatgactattggaaacaacactcacgagttatgtggttgtctgaaggtgacatgaatactcagttttttcaccaaagagctagtaacaggaagagaaggaatgagatcaagggactgttcaataatgaaggagtttggtgcacggaggatactgagttggaaaaaattgtgcttgactattttcgtaatttgattacaactagtcaccctacaaacatgaagttgtttactaatctatttccacaagttatctcaaatgagatgaacatggagtttgtaacgtcccgaaccagaatttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

241

Amino Acids

28.94

Weight (kDa)

7.67

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 212
AcsI RAATTY 2 cut(s) 295, 717
AcuI CTGAAG 2 cut(s) 390, 486
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 6 cut(s) 55, 63, 146, 227, 301, 544
AhlI ACTAGT 1 cut(s) 623
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 2 cut(s) 38, 395
AluBI AGCT 3 cut(s) 149, 263, 503
AluI AGCT 3 cut(s) 149, 263, 503
Alw21I GWGCWC 2 cut(s) 252, 566
Alw44I GTGCAC 1 cut(s) 562
AlwI GGATC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 9
ApaLI GTGCAC 1 cut(s) 562
ApoI RAATTY 2 cut(s) 295, 717
AspLEI GCGC 1 cut(s) 318
AsuC2I CCSGG 3 cut(s) 10, 11, 32
AsuHPI GGTGA 4 cut(s) 65, 482, 485, 620
AvaI CYCGRG 1 cut(s) 9
BaeGI GKGCMC 1 cut(s) 566
BauI CACGAG 1 cut(s) 447
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 252, 566
BciT130I CCWGG 2 cut(s) 40, 397
BciVI GTATCC 1 cut(s) 565
BcnI CCSGG 3 cut(s) 10, 11, 32
BcuI ACTAGT 1 cut(s) 623
BfaI CTAG 4 cut(s) 105, 255, 504, 624
BfuI GTATCC 1 cut(s) 565
Bme1390I CCNGG 5 cut(s) 10, 11, 32, 40, 397
BmeT110I CYCGRG 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 205
BmrFI CCNGG 5 cut(s) 10, 11, 32, 40, 397
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpuMI CCSGG 3 cut(s) 10, 11, 32
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse1I ACTGG 2 cut(s) 336, 393
BseBI CCWGG 2 cut(s) 40, 397
BseDI CCNNGG 2 cut(s) 9, 39
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 3 cut(s) 297, 497, 567
BseNI ACTGG 2 cut(s) 336, 393
BseRI GAGGAG 1 cut(s) 133
BseSI GKGCMC 1 cut(s) 566
BsiHKAI GWGCWC 2 cut(s) 252, 566
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 2 cut(s) 10, 32
BslFI GGGAC 2 cut(s) 549, 691
BslI CCNNNNNNNGG 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 549, 691
BsoBI CYCGRG 1 cut(s) 9
Bsp1286I GDGCHC 2 cut(s) 252, 566
Bsp143I GATC 3 cut(s) 70, 217, 528
BspCNI CTCAG 3 cut(s) 298, 496, 568
BspPI GGATC 1 cut(s) 212
BsrI ACTGG 2 cut(s) 336, 393
BssECI CCNNGG 2 cut(s) 9, 39
BssMI GATC 3 cut(s) 70, 217, 528
BssNI GRCGYC 1 cut(s) 35
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 2 cut(s) 40, 397
Bst4CI ACNGT 2 cut(s) 232, 540
Bst6I CTCTTC 3 cut(s) 110, 125, 509
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 178, 281
BstDEI CTNAG 3 cut(s) 306, 483, 576
BstEII GGTNACC 1 cut(s) 43
BstHHI GCGC 1 cut(s) 318
BstKTI GATC 3 cut(s) 73, 220, 531
BstMBI GATC 3 cut(s) 70, 217, 528
BstNI CCWGG 2 cut(s) 40, 397
BstPI GGTNACC 1 cut(s) 43
BstSCI CCNGG 5 cut(s) 8, 9, 30, 38, 395
BstSLI GKGCMC 1 cut(s) 566
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuI GTATCC 1 cut(s) 565
BtrI CACGTC 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 178, 281
CfoI GCGC 1 cut(s) 318
Cfr9I CCCGGG 1 cut(s) 9
CseI GACGC 1 cut(s) 24
CspCI CAANNNNNGTGG 2 cut(s) 248, 283
CviAII CATG 4 cut(s) 425, 475, 640, 691
CviJI RGCY 7 cut(s) 5, 149, 263, 305, 395, 400, 503
CviKI_1 RGCY 7 cut(s) 5, 149, 263, 305, 395, 400, 503
DdeI CTNAG 3 cut(s) 306, 483, 576
DpnI GATC 3 cut(s) 72, 219, 530
DpnII GATC 3 cut(s) 70, 217, 528
DraI TTTAAA 1 cut(s) 240
Eam1104I CTCTTC 3 cut(s) 110, 125, 509
EarI CTCTTC 3 cut(s) 110, 125, 509
Eco57I CTGAAG 2 cut(s) 390, 486
Eco88I CYCGRG 1 cut(s) 9
Eco91I GGTNACC 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 43
EcoRII CCWGG 2 cut(s) 38, 395
FaeI CATG 4 cut(s) 428, 478, 643, 694
FaiI YATR 9 cut(s) 97, 285, 364, 383, 426, 455, 476, 641, 692
FaqI GGGAC 2 cut(s) 549, 691
FatI CATG 4 cut(s) 424, 474, 639, 690
FspBI CTAG 4 cut(s) 105, 255, 504, 624
GlaI GCGC 1 cut(s) 317
HapII CCGG 2 cut(s) 10, 32
HgaI GACGC 1 cut(s) 24
HhaI GCGC 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 4 cut(s) 428, 478, 643, 694
Hin6I GCGC 1 cut(s) 316
HinP1I GCGC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 1 cut(s) 82
HpaII CCGG 2 cut(s) 10, 32
HphI GGTGA 4 cut(s) 65, 482, 485, 620
Hpy166II GTNNAC 2 cut(s) 564, 651
Hpy188I TCNGA 3 cut(s) 70, 81, 466
Hpy188III TCNNGA 2 cut(s) 447, 708
Hpy8I GTNNAC 2 cut(s) 564, 651
HpyAV CCTTC 6 cut(s) 69, 86, 295, 461, 513, 545
HpyCH4III ACNGT 2 cut(s) 232, 540
HpyCH4IV ACGT 2 cut(s) 204, 704
HpyCH4V TGCA 2 cut(s) 362, 564
HpyF3I CTNAG 3 cut(s) 306, 483, 576
HpySE526I ACGT 2 cut(s) 204, 704
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 4 cut(s) 428, 478, 643, 694
HspAI GCGC 1 cut(s) 316
Kzo9I GATC 3 cut(s) 70, 217, 528
LmnI GCTCC 1 cut(s) 276
MaeI CTAG 4 cut(s) 105, 255, 504, 624
MaeII ACGT 2 cut(s) 204, 704
MaeIII GTNAC 6 cut(s) 43, 156, 470, 506, 626, 700
MalI GATC 3 cut(s) 72, 219, 530
MboI GATC 3 cut(s) 70, 217, 528
MboII GAAGA 7 cut(s) 127, 142, 179, 212, 383, 386, 526
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 252, 566
MluCI AATT 4 cut(s) 295, 588, 610, 717
MmeI TCCRAC 2 cut(s) 69, 561
MnlI CCTC 6 cut(s) 85, 111, 114, 185, 202, 562
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 2 cut(s) 10, 32
MspR9I CCNGG 5 cut(s) 10, 11, 32, 40, 397
MvaI CCWGG 2 cut(s) 40, 397
NciI CCSGG 3 cut(s) 10, 11, 32
NdeII GATC 3 cut(s) 70, 217, 528
NlaIII CATG 4 cut(s) 428, 478, 643, 694
NmuCI GTSAC 2 cut(s) 470, 626
PfeI GAWTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 38, 395
PspEI GGTNACC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 38, 395
PsuI RGATCY 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 423
SaqAI TTAA 1 cut(s) 239
Sau3AI GATC 3 cut(s) 70, 217, 528
ScrFI CCNGG 5 cut(s) 10, 11, 32, 40, 397
SduI GDGCHC 2 cut(s) 252, 566
SmaI CCCGGG 1 cut(s) 11
SmiMI CAYNNNNRTG 1 cut(s) 423
SpeI ACTAGT 1 cut(s) 623
Sse9I AATT 4 cut(s) 295, 588, 610, 717
SspMI CTAG 4 cut(s) 105, 255, 504, 624
StyD4I CCNGG 5 cut(s) 8, 9, 30, 38, 395
TaaI ACNGT 2 cut(s) 232, 540
TaiI ACGT 2 cut(s) 207, 707
TasI AATT 4 cut(s) 295, 588, 610, 717
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TseFI GTSAC 2 cut(s) 470, 626
Tsp45I GTSAC 2 cut(s) 470, 626
TspDTI ATGAA 6 cut(s) 180, 407, 491, 564, 656, 701
TspGWI ACGGA 2 cut(s) 35, 581
TspMI CCCGGG 1 cut(s) 9
VneI GTGCAC 1 cut(s) 562
XapI RAATTY 2 cut(s) 295, 717
XmaI CCCGGG 1 cut(s) 9
XspI CTAG 4 cut(s) 105, 255, 504, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.