Rmu_sc0002833.1_g000024

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002833.1
OG0000619
Physical Location & Seq
Forward (+)
111898 .. 113400
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002833.1_g000024.1.cds

Sequence Viewer

Length: 1449 bp
atgaggattctatgttggaactgccaaggaattgggaatccttggacagttccgggtcttaaaggggtgttatccctcaatcttcctagtattatttttctttacgaaacccgttgtacagtagaggagatgaatagggttagttttcaaattggttttaagaatgcttttacagtcccttgtatttttatgaaaaagaaaaatggtaaaggagttagtcgacgtggaggcctatgcttactttgggatgcggatgttgctgtctctctgagaacatactctgataatcatattgatgttgaagtcggaaagctggataatcctggcagatggagatttaccgtggtttatggtcaccctagagctgagagacgtcatctaacctggaacttgctcaaaactttgggaaaccaacgaacgctcccctgggtcttagggggtgattttaacgagattcttgcttcgtgtgagaaggaaggaggccggtttagacgtgaaaggcagatggatgggtttagagaagtggttaatttattctccctacgtaatatcacctggtcaggacctttgtttacttggagaggtatcagagggggagaagaggtcaaagtgcgtttggataggtttcttgccatgcggacttggttggatagatttctacattcaagggctgttaatctgaatccaaataaatctgatcatctgccgattttgttagaggttcttgaacgacgtattttaaagaagaagacgaagaagaagaaaaggaggagagagtttcgttttcaagaaatttggctgagaaaagaggattgtgcggtgtgcaacaaaattaagacaaccagacaagctctcttagagtggagtgaggttcggtttgggagtctgaagaacaaaattgaagaaacacaagctggccttgctattttttatgactcttctttttctgctccagatgacaatgttcgcagggacttggaatcaaggctcagtgagttgctccaacaagaacagctattttggaaacaacgtgctaaggttttctggcttagtgacggtgatatgaacacgagatttttccatcaacgggctagcaatcggagaaggaaaaattgcattaaggggttatttgatgatgatcataagtggtgtacggaggatgaagacttggagagggtggttctatcttactttggggatctttttactacgtcgtctccttcgtcttttgacagggtggcggacgtgatcccgaccctaggtacggaagagatgaatagagagcttatacaggttatttctatggaggaggtgcatggagcgttgaaacagatgcacccgtctaaagcacctggtcctgatggtttctcaccttgcttttatcaatgtttttgggatgttgttagaatggttgtcttggaagcaatctggagctttgctgggtcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

482

Amino Acids

56.25

Weight (kDa)

9.4

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 376
AccI GTMKAC 1 cut(s) 220
AciI CCGC 4 cut(s) 251, 637, 818, 1241
AclWI GGATC 2 cut(s) 1206, 1243
AcsI RAATTY 1 cut(s) 792
AcuI CTGAAG 1 cut(s) 908
AcyI GRCGYC 1 cut(s) 373
AfaI GTAC 3 cut(s) 118, 1153, 1264
AfiI CCNNNNNNNGG 3 cut(s) 1087, 1259, 1264
AgsI TTSAA 7 cut(s) 149, 302, 666, 728, 788, 902, 1327
AjiI CACGTC 3 cut(s) 224, 494, 1246
AjnI CCWGG 5 cut(s) 322, 383, 425, 554, 1351
AluBI AGCT 7 cut(s) 313, 365, 851, 914, 1015, 1285, 1434
AluI AGCT 7 cut(s) 313, 365, 851, 914, 1015, 1285, 1434
Alw26I GTCTC 3 cut(s) 268, 364, 1221
AlwI GGATC 2 cut(s) 1206, 1243
AoxI GGCC 3 cut(s) 229, 481, 916
ApoI RAATTY 1 cut(s) 792
AspA2I CCTAGG 1 cut(s) 1258
AspS9I GGNCC 2 cut(s) 563, 1355
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 5 cut(s) 347, 452, 544, 1070, 1362
AsuNHI GCTAGC 1 cut(s) 1091
AvaII GGWCC 2 cut(s) 563, 1355
AvrII CCTAGG 1 cut(s) 1258
BauI CACGAG 1 cut(s) 1069
BbsI GAAGAC 2 cut(s) 755, 1170
BccI CCATC 5 cut(s) 324, 499, 503, 1089, 1355
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 5 cut(s) 324, 385, 427, 556, 1353
BclI TGATCA 2 cut(s) 697, 1138
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 3 cut(s) 268, 364, 1221
BfaI CTAG 4 cut(s) 87, 360, 1092, 1259
BlnI CCTAGG 1 cut(s) 1258
Bme1390I CCNGG 6 cut(s) 54, 324, 385, 427, 556, 1353
Bme18I GGWCC 2 cut(s) 563, 1355
BmgBI CACGTC 3 cut(s) 224, 494, 1246
BmgT120I GGNCC 2 cut(s) 563, 1355
BmrFI CCNGG 6 cut(s) 54, 324, 385, 427, 556, 1353
BmsI GCATC 2 cut(s) 238, 1323
BmtI GCTAGC 1 cut(s) 1095
BpiI GAAGAC 2 cut(s) 755, 1170
BpmI CTGGAG 1 cut(s) 936
Bpu10I CCTNAGC 1 cut(s) 1035
BpuMI CCSGG 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 1137
BsaHI GRCGYC 1 cut(s) 373
BsaJI CCNNGG 6 cut(s) 25, 41, 342, 425, 426, 1258
BsaXI ACNNNNNCTCC 6 cut(s) 405, 435, 588, 618, 1201, 1231
Bsc4I CCNNNNNNNGG 3 cut(s) 1087, 1259, 1264
Bse118I RCCGGY 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 5 cut(s) 324, 385, 427, 556, 1353
BseDI CCNNGG 6 cut(s) 25, 41, 342, 425, 426, 1258
BseGI GGATG 5 cut(s) 253, 259, 514, 1165, 1402
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 3 cut(s) 1087, 1259, 1264
BseMII CTCAG 4 cut(s) 260, 357, 791, 1003
BseRI GAGGAG 3 cut(s) 140, 784, 1322
BseYI CCCAGC 1 cut(s) 1439
BshFI GGCC 3 cut(s) 231, 483, 918
BsiSI CCGG 2 cut(s) 53, 484
BslFI GGGAC 2 cut(s) 161, 986
BslI CCNNNNNNNGG 3 cut(s) 1087, 1259, 1264
BsmAI GTCTC 3 cut(s) 268, 364, 1221
BsmBI CGTCTC 2 cut(s) 364, 1221
BsmFI GGGAC 2 cut(s) 161, 986
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 3 cut(s) 231, 483, 918
Bsp1407I TGTACA 1 cut(s) 116
Bsp143I GATC 4 cut(s) 697, 1138, 1198, 1248
BspACI CCGC 4 cut(s) 251, 637, 818, 1241
BspANI GGCC 3 cut(s) 231, 483, 918
BspCNI CTCAG 4 cut(s) 261, 358, 792, 1002
BspOI GCTAGC 1 cut(s) 1095
BspPI GGATC 2 cut(s) 1206, 1243
BsrFI RCCGGY 1 cut(s) 483
BsrGI TGTACA 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 6 cut(s) 25, 41, 342, 425, 426, 1258
BssMI GATC 4 cut(s) 697, 1138, 1198, 1248
BssNI GRCGYC 1 cut(s) 373
BssSI CACGAG 1 cut(s) 1069
BssT1I CCWWGG 3 cut(s) 25, 41, 1258
Bst2BI CACGAG 1 cut(s) 1069
Bst2UI CCWGG 5 cut(s) 324, 385, 427, 556, 1353
Bst4CI ACNGT 5 cut(s) 49, 121, 175, 343, 1058
Bst6I CTCTTC 3 cut(s) 594, 943, 1263
BstACI GRCGYC 1 cut(s) 373
BstAUI TGTACA 1 cut(s) 116
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 916, 1093
BstDEI CTNAG 8 cut(s) 269, 366, 433, 800, 856, 989, 1035, 1049
BstDSI CCRYGG 1 cut(s) 342
BstEII GGTNACC 1 cut(s) 353
BstF5I GGATG 5 cut(s) 253, 259, 514, 1165, 1402
BstKTI GATC 4 cut(s) 700, 1141, 1201, 1251
BstMAI GTCTC 3 cut(s) 268, 364, 1221
BstMBI GATC 4 cut(s) 697, 1138, 1198, 1248
BstMWI GCNNNNNNNGC 2 cut(s) 257, 920
BstNI CCWGG 5 cut(s) 324, 385, 427, 556, 1353
BstPI GGTNACC 1 cut(s) 353
BstSCI CCNGG 6 cut(s) 52, 322, 383, 425, 554, 1351
BstSNI TACGTA 1 cut(s) 545
BstV2I GAAGAC 2 cut(s) 755, 1170
BstX2I RGATCY 1 cut(s) 1198
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 1198
BsuRI GGCC 3 cut(s) 231, 483, 918
BtgI CCRYGG 1 cut(s) 342
BtrI CACGTC 3 cut(s) 224, 494, 1246
BtsCI GGATG 5 cut(s) 253, 259, 514, 1165, 1402
BtsIMutI CAGTG 1 cut(s) 997
Cac8I GCNNGC 2 cut(s) 916, 1093
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 563, 1355
CsiI ACCWGGT 2 cut(s) 554, 1351
Csp6I GTAC 3 cut(s) 117, 1152, 1263
CviAII CATG 2 cut(s) 634, 1316
CviQI GTAC 3 cut(s) 117, 1152, 1263
DdeI CTNAG 8 cut(s) 269, 366, 433, 800, 856, 989, 1035, 1049
DpnI GATC 4 cut(s) 699, 1140, 1200, 1250
DpnII GATC 4 cut(s) 697, 1138, 1198, 1248
DraI TTTAAA 1 cut(s) 741
Eam1104I CTCTTC 3 cut(s) 594, 943, 1263
EarI CTCTTC 3 cut(s) 594, 943, 1263
EciI GGCGGA 1 cut(s) 1256
Eco105I TACGTA 1 cut(s) 545
Eco130I CCWWGG 3 cut(s) 25, 41, 1258
Eco147I AGGCCT 1 cut(s) 231
Eco47I GGWCC 2 cut(s) 563, 1355
Eco57I CTGAAG 1 cut(s) 908
Eco91I GGTNACC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 353
EcoRII CCWGG 5 cut(s) 322, 383, 425, 554, 1351
EcoT14I CCWWGG 3 cut(s) 25, 41, 1258
ErhI CCWWGG 3 cut(s) 25, 41, 1258
Esp3I CGTCTC 2 cut(s) 364, 1221
FaeI CATG 2 cut(s) 637, 1319
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 2 cut(s) 161, 986
FatI CATG 2 cut(s) 633, 1315
FbaI TGATCA 2 cut(s) 697, 1138
FblI GTMKAC 1 cut(s) 220
FokI GGATG 5 cut(s) 260, 266, 521, 1172, 1409
FspBI CTAG 4 cut(s) 87, 360, 1092, 1259
GsaI CCCAGC 1 cut(s) 1443
GsuI CTGGAG 1 cut(s) 936
HaeIII GGCC 3 cut(s) 231, 483, 918
HapII CCGG 2 cut(s) 53, 484
Hin1I GRCGYC 1 cut(s) 373
Hin1II CATG 2 cut(s) 637, 1319
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 7 cut(s) 7, 37, 454, 682, 883, 935, 980
HpaII CCGG 2 cut(s) 53, 484
HphI GGTGA 5 cut(s) 347, 452, 544, 1070, 1362
Hpy166II GTNNAC 3 cut(s) 221, 573, 1152
Hpy188I TCNGA 8 cut(s) 270, 283, 308, 590, 681, 697, 888, 1101
Hpy188III TCNNGA 7 cut(s) 561, 725, 788, 953, 1252, 1358, 1429
Hpy8I GTNNAC 3 cut(s) 221, 573, 1152
Hpy99I CGWCG 3 cut(s) 225, 735, 1216
HpyAV CCTTC 4 cut(s) 466, 470, 1098, 1230
HpyCH4III ACNGT 5 cut(s) 49, 121, 175, 343, 1058
HpyCH4IV ACGT 8 cut(s) 223, 373, 493, 544, 733, 1030, 1211, 1245
HpyCH4V TGCA 4 cut(s) 825, 1116, 1315, 1336
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 920
HpyF3I CTNAG 8 cut(s) 269, 366, 433, 800, 856, 989, 1035, 1049
HpySE526I ACGT 8 cut(s) 223, 373, 493, 544, 733, 1030, 1211, 1245
Hsp92I GRCGYC 1 cut(s) 373
Hsp92II CATG 2 cut(s) 637, 1319
Ksp22I TGATCA 2 cut(s) 697, 1138
Kzo9I GATC 4 cut(s) 697, 1138, 1198, 1248
LmnI GCTCC 5 cut(s) 426, 955, 1005, 1319, 1431
LweI GCATC 2 cut(s) 238, 1323
MabI ACCWGGT 2 cut(s) 554, 1351
MaeI CTAG 4 cut(s) 87, 360, 1092, 1259
MaeII ACGT 8 cut(s) 223, 373, 493, 544, 733, 1030, 1211, 1245
MaeIII GTNAC 2 cut(s) 353, 1052
MalI GATC 4 cut(s) 699, 1140, 1200, 1250
MboI GATC 4 cut(s) 697, 1138, 1198, 1248
MflI RGATCY 1 cut(s) 1198
MluCI AATT 7 cut(s) 30, 150, 529, 792, 831, 897, 1111
MlyI GAGTC 2 cut(s) 892, 929
MmeI TCCRAC 3 cut(s) 286, 627, 1027
MseI TTAA 9 cut(s) 60, 159, 447, 528, 675, 740, 834, 1119, 1447
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 53, 484
MspR9I CCNGG 6 cut(s) 54, 324, 385, 427, 556, 1353
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 5 cut(s) 324, 385, 427, 556, 1353
MwoI GCNNNNNNNGC 2 cut(s) 257, 920
NciI CCSGG 1 cut(s) 54
NdeII GATC 4 cut(s) 697, 1138, 1198, 1248
NheI GCTAGC 1 cut(s) 1091
NlaIII CATG 2 cut(s) 637, 1319
NmuCI GTSAC 2 cut(s) 353, 1052
PasI CCCWGGG 1 cut(s) 426
PceI AGGCCT 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 1220
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 5 cut(s) 7, 37, 454, 682, 980
PleI GAGTC 2 cut(s) 891, 929
PpsI GAGTC 2 cut(s) 891, 929
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 563
Psp6I CCWGG 5 cut(s) 322, 383, 425, 554, 1351
PspEI GGTNACC 1 cut(s) 353
PspFI CCCAGC 1 cut(s) 1439
PspGI CCWGG 5 cut(s) 322, 383, 425, 554, 1351
PspPI GGNCC 2 cut(s) 563, 1355
PspPPI RGGWCCY 1 cut(s) 563
PsuI RGATCY 1 cut(s) 1198
RsaI GTAC 3 cut(s) 118, 1153, 1264
RsaNI GTAC 3 cut(s) 117, 1152, 1263
RseI CAYNNNNRTG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 219
SaqAI TTAA 9 cut(s) 60, 159, 447, 528, 675, 740, 834, 1119, 1447
Sau3AI GATC 4 cut(s) 697, 1138, 1198, 1248
Sau96I GGNCC 2 cut(s) 563, 1355
SchI GAGTC 2 cut(s) 892, 929
ScrFI CCNGG 6 cut(s) 54, 324, 385, 427, 556, 1353
SexAI ACCWGGT 2 cut(s) 554, 1351
SfaNI GCATC 2 cut(s) 238, 1323
SinI GGWCC 2 cut(s) 563, 1355
SmiMI CAYNNNNRTG 1 cut(s) 294
SnaBI TACGTA 1 cut(s) 545
Sse9I AATT 7 cut(s) 30, 150, 529, 792, 831, 897, 1111
SseBI AGGCCT 1 cut(s) 231
SsiI CCGC 4 cut(s) 251, 637, 818, 1241
SspMI CTAG 4 cut(s) 87, 360, 1092, 1259
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 6 cut(s) 52, 322, 383, 425, 554, 1351
StyI CCWWGG 3 cut(s) 25, 41, 1258
TaaI ACNGT 5 cut(s) 49, 121, 175, 343, 1058
TaiI ACGT 8 cut(s) 226, 376, 496, 547, 736, 1033, 1214, 1248
TaqI TCGA 1 cut(s) 220
TasI AATT 7 cut(s) 30, 150, 529, 792, 831, 897, 1111
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 5 cut(s) 7, 37, 454, 682, 980
Tru1I TTAA 9 cut(s) 60, 159, 447, 528, 675, 740, 834, 1119, 1447
Tru9I TTAA 9 cut(s) 60, 159, 447, 528, 675, 740, 834, 1119, 1447
TscAI CASTG 1 cut(s) 997
TseFI GTSAC 2 cut(s) 353, 1052
Tsp45I GTSAC 2 cut(s) 353, 1052
TspDTI ATGAA 5 cut(s) 146, 206, 1079, 1176, 1289
TspGWI ACGGA 2 cut(s) 1169, 1280
TspRI CASTG 1 cut(s) 997
VpaK11BI GGWCC 2 cut(s) 563, 1355
XapI RAATTY 1 cut(s) 792
XmaJI CCTAGG 1 cut(s) 1258
XmiI GTMKAC 1 cut(s) 220
XspI CTAG 4 cut(s) 87, 360, 1092, 1259
ZraI GACGTC 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.