Rmu_sc0028652.1_g000007

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0028652.1
OG0000619
Physical Location & Seq
Forward (+)
16782 .. 17342
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0028652.1_g000007.1.cds

Sequence Viewer

Length: 561 bp
atgaatgacatgaaggaggcgttggcgttttgtgagttgggggatattaattttgttggtccaagattcacttggagggagataagaggtggggaggaggtccgagtgcgcctagacagatttttgagttccttgggttggagggatttgtctccggggtctagagttcgacatctggatccttgtacttctgatcatctcccattacttcttgaagtgcgtgtgcaaaagaagaggaggaaaaaaaagaggaaaaagagatttaaatttgagcagtgctggcttttggatgaaaaatgcaaggaggtagttcaaacaagttgggttagtgtgacggggactgggccatcccaagctttagggaataaaattcaaaaaacccgtgtagctctagagtcctggagtgaggagaacttcggccgtattgggaaggagatcgaaaagacccggtgtcaactctcggtcttctttgacacttcgctctcggcttcgattgatggtgttagaggagccctccgatctagacttaatgatctccttcatcaagagcagtgtttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

186

Amino Acids

21.56

Weight (kDa)

9.58

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 173, 186
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 266, 369
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 3 cut(s) 215, 314, 374
AhdI GACNNNNNGTC 1 cut(s) 450
AjnI CCWGG 1 cut(s) 398
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 2 cut(s) 356, 389
AluI AGCT 2 cut(s) 356, 389
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 2 cut(s) 173, 186
AoxI GGCC 2 cut(s) 344, 418
ApoI RAATTY 2 cut(s) 266, 369
AseI ATTAAT 1 cut(s) 48
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 3 cut(s) 59, 100, 344
AsuC2I CCSGG 2 cut(s) 156, 448
AvaII GGWCC 2 cut(s) 59, 100
BamHI GGATCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 514
BbsI GAAGAC 1 cut(s) 457
BccI CCATC 2 cut(s) 355, 491
BceAI ACGGC 1 cut(s) 405
BciT130I CCWGG 1 cut(s) 400
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 2 cut(s) 156, 448
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 4 cut(s) 113, 162, 392, 522
Bme1390I CCNGG 3 cut(s) 156, 400, 448
Bme18I GGWCC 2 cut(s) 59, 100
BmeRI GACNNNNNGTC 1 cut(s) 450
BmgT120I GGNCC 3 cut(s) 59, 100, 344
BmiI GGNNCC 2 cut(s) 180, 511
BmrFI CCNGG 3 cut(s) 156, 400, 448
BmrI ACTGGG 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 351
BpiI GAAGAC 1 cut(s) 457
BplI GAGNNNNNCTC 2 cut(s) 498, 530
BpmI CTGGAG 1 cut(s) 421
BpuMI CCSGG 2 cut(s) 156, 448
BsaJI CCNNGG 2 cut(s) 132, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse1I ACTGG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 2 cut(s) 132, 155
BseGI GGATG 2 cut(s) 295, 347
BseLI CCNNNNNNNGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 4 cut(s) 110, 250, 422, 522
BseX3I CGGCCG 1 cut(s) 418
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 2 cut(s) 346, 420
BsiEI CGRYCG 1 cut(s) 421
BsiSI CCGG 2 cut(s) 155, 448
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 156
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 2 cut(s) 346, 420
Bsp1286I GDGCHC 1 cut(s) 514
Bsp143I GATC 5 cut(s) 178, 193, 435, 518, 532
BspANI GGCC 2 cut(s) 346, 420
BspLI GGNNCC 2 cut(s) 180, 511
BspPI GGATC 2 cut(s) 173, 186
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 132, 155
BssMI GATC 5 cut(s) 178, 193, 435, 518, 532
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 281
BstF5I GGATG 2 cut(s) 295, 347
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 5 cut(s) 181, 196, 438, 521, 535
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 5 cut(s) 178, 193, 435, 518, 532
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNI CCWGG 1 cut(s) 400
BstSCI CCNGG 3 cut(s) 154, 398, 446
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BstZI CGGCCG 1 cut(s) 418
BsuRI GGCC 2 cut(s) 346, 420
BtsCI GGATG 2 cut(s) 295, 347
BtsI GCAGTG 2 cut(s) 281, 557
BtsIMutI CAGTG 2 cut(s) 281, 557
Cac8I GCNNGC 1 cut(s) 281
CfoI GCGC 1 cut(s) 111
Cfr13I GGNCC 3 cut(s) 59, 100, 344
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 10
CviJI RGCY 7 cut(s) 283, 346, 356, 389, 420, 488, 512
CviKI_1 RGCY 7 cut(s) 283, 346, 356, 389, 420, 488, 512
CviQI GTAC 1 cut(s) 186
DpnI GATC 5 cut(s) 180, 195, 437, 520, 534
DpnII GATC 5 cut(s) 178, 193, 435, 518, 532
DraI TTTAAA 1 cut(s) 265
DriI GACNNNNNGTC 1 cut(s) 450
EaeI YGGCCR 1 cut(s) 418
EagI CGGCCG 1 cut(s) 418
Eam1104I CTCTTC 1 cut(s) 227
Eam1105I GACNNNNNGTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 227
EclXI CGGCCG 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 59, 100
Eco52I CGGCCG 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 514
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 1 cut(s) 13
FaiI YATR 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 55, 87
FaqI GGGAC 1 cut(s) 352
FatI CATG 1 cut(s) 9
FbaI TGATCA 1 cut(s) 193
FokI GGATG 2 cut(s) 302, 334
FriOI GRGCYC 1 cut(s) 514
FspBI CTAG 4 cut(s) 113, 162, 392, 522
GlaI GCGC 1 cut(s) 110
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 2 cut(s) 346, 420
HapII CCGG 2 cut(s) 155, 448
HhaI GCGC 1 cut(s) 111
Hin1II CATG 1 cut(s) 13
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HincII GTYRAC 1 cut(s) 455
HindII GTYRAC 1 cut(s) 455
HindIII AAGCTT 1 cut(s) 354
HinfI GANTC 2 cut(s) 66, 395
HpaII CCGG 2 cut(s) 155, 448
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 3 cut(s) 104, 193, 518
Hpy188III TCNNGA 6 cut(s) 162, 176, 212, 392, 522, 545
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 3 cut(s) 7, 424, 548
HpyCH4V TGCA 2 cut(s) 226, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
Hsp92II CATG 1 cut(s) 13
HspAI GCGC 1 cut(s) 109
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 5 cut(s) 178, 193, 435, 518, 532
LmnI GCTCC 1 cut(s) 509
LpnPI CCDG 7 cut(s) 161, 168, 265, 327, 385, 412, 461
MaeI CTAG 4 cut(s) 113, 162, 392, 522
MaeIII GTNAC 1 cut(s) 331
MalI GATC 5 cut(s) 180, 195, 437, 520, 534
MboI GATC 5 cut(s) 178, 193, 435, 518, 532
MboII GAAGA 2 cut(s) 244, 457
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 1 cut(s) 514
MluCI AATT 3 cut(s) 49, 266, 369
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 1 cut(s) 119
MseI TTAA 3 cut(s) 48, 264, 528
MspI CCGG 2 cut(s) 155, 448
MspR9I CCNGG 3 cut(s) 156, 400, 448
MvaI CCWGG 1 cut(s) 400
MwoI GCNNNNNNNGC 1 cut(s) 280
NciI CCSGG 2 cut(s) 156, 448
NdeII GATC 5 cut(s) 178, 193, 435, 518, 532
NlaIII CATG 1 cut(s) 13
NlaIV GGNNCC 2 cut(s) 180, 511
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 1 cut(s) 331
PfeI GAWTC 1 cut(s) 66
PfoI TCCNGGA 1 cut(s) 398
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PshBI ATTAAT 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PspN4I GGNNCC 2 cut(s) 180, 511
PspPI GGNCC 3 cut(s) 59, 100, 344
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 3 cut(s) 48, 264, 528
Sau3AI GATC 5 cut(s) 178, 193, 435, 518, 532
Sau96I GGNCC 3 cut(s) 59, 100, 344
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 156, 400, 448
SduI GDGCHC 1 cut(s) 514
SetI ASST 5 cut(s) 91, 102, 309, 358, 391
SinI GGWCC 2 cut(s) 59, 100
SmiI ATTTAAAT 1 cut(s) 265
Sse9I AATT 3 cut(s) 49, 266, 369
SspMI CTAG 4 cut(s) 113, 162, 392, 522
StyD4I CCNGG 3 cut(s) 154, 398, 446
StyI CCWWGG 1 cut(s) 132
SwaI ATTTAAAT 1 cut(s) 265
TaqI TCGA 3 cut(s) 169, 438, 491
TaqII GACCGA 1 cut(s) 451
TasI AATT 3 cut(s) 49, 266, 369
TatI WGTACW 1 cut(s) 185
TfiI GAWTC 1 cut(s) 66
Tru1I TTAA 3 cut(s) 48, 264, 528
Tru9I TTAA 3 cut(s) 48, 264, 528
TscAI CASTG 2 cut(s) 281, 557
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 4 cut(s) 17, 26, 306, 530
TspRI CASTG 2 cut(s) 281, 557
VpaK11BI GGWCC 2 cut(s) 59, 100
VspI ATTAAT 1 cut(s) 48
XapI RAATTY 2 cut(s) 266, 369
XbaI TCTAGA 3 cut(s) 161, 391, 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XspI CTAG 4 cut(s) 113, 162, 392, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.