Rmu_sc0008280.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008280.1
OG0000619
Physical Location & Seq
Forward (+)
1160 .. 1927
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008280.1_g000001.1.cds

Sequence Viewer

Length: 768 bp
atgatccgaacaggtggaggttcacgggtttgtatgggcaaccaaaagtggaaaatcgttacaaaacctagcttttgttgcggcaacttagtcttcttgggaattttccgtggattgttgggggtgactataatgagatttcatcttctgaagacaagagtggaggcgttgtttgaaggagtagacaaatggaggggttacaggaggccatggcgttttgtgaacttggtgaatccaagtttgttgggcccagatttacgtggcgggggaagagaggtggtgaggaagtcaaaatccgactggacaagtttttgggaacggatagctggaaatccatgttctctactacgtcatctgaacccttcaaaatcagaccatgttccaattgtcttggagattaaggttcatgcgtgtcagaagaagaaaatgagggaaaaaaagttcaaatttgaagagttttggttacaggaggaagcttgcagggaaatagttaagaagggatggagtggtatgtctggtgttgatcatttccacactttttggaacataatccaaaatactaggcaagaacttaagcggtggagttttgagcattttgagaatctgacaagagagattgagaaaacacgggcacaactggctgtgttttttgatggctctatgtcggcaccacctgaggaggagcggttatttcttgaaacgcgactgaacgagttacttcgccgtgaagaatgtttttggaagcagcggtcgaaggtgttttggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

255

Amino Acids

30.21

Weight (kDa)

9.89

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 667
AccBSI CCGCTC 1 cut(s) 685
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 703
AciI CCGC 5 cut(s) 81, 264, 577, 685, 748
AcsI RAATTY 2 cut(s) 102, 446
AcuI CTGAAG 1 cut(s) 170
AflII CTTAAG 1 cut(s) 572
AgsI TTSAA 5 cut(s) 176, 366, 445, 452, 698
AloI GAACNNNNNNTCC 2 cut(s) 425, 457
AluBI AGCT 3 cut(s) 72, 326, 476
AluI AGCT 3 cut(s) 72, 326, 476
AoxI GGCC 2 cut(s) 206, 247
ApaI GGGCCC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 745
ApoI RAATTY 2 cut(s) 102, 446
AspS9I GGNCC 2 cut(s) 247, 248
AsuHPI GGTGA 3 cut(s) 136, 241, 292
AxyI CCTNAGG 1 cut(s) 675
BaeGI GKGCMC 2 cut(s) 251, 634
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 251
BbsI GAAGAC 2 cut(s) 85, 158
BbvI GCAGC 1 cut(s) 757
BccI CCATC 2 cut(s) 495, 647
BceAI ACGGC 1 cut(s) 708
BclI TGATCA 1 cut(s) 523
BfaI CTAG 2 cut(s) 69, 561
BfrI CTTAAG 1 cut(s) 572
BisI GCNGC 2 cut(s) 82, 746
BlsI GCNGC 2 cut(s) 83, 747
BmgT120I GGNCC 2 cut(s) 247, 248
BmiI GGNNCC 2 cut(s) 249, 669
BpiI GAAGAC 2 cut(s) 85, 158
BsaAI YACGTR 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 109, 209
BsaXI ACNNNNNCTCC 4 cut(s) 155, 185, 671, 701
Bse1I ACTGG 2 cut(s) 305, 642
Bse21I CCTNAGG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 109, 209
BseGI GGATG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 2 cut(s) 305, 642
BseRI GAGGAG 2 cut(s) 692, 695
BseSI GKGCMC 2 cut(s) 251, 634
BseXI GCAGC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 703
Bsh1285I CGRYCG 1 cut(s) 752
BshFI GGCC 2 cut(s) 208, 249
BshNI GGYRCC 1 cut(s) 667
BsiEI CGRYCG 1 cut(s) 752
BsnI GGCC 2 cut(s) 208, 249
Bsp120I GGGCCC 1 cut(s) 247
Bsp1286I GDGCHC 2 cut(s) 251, 634
Bsp143I GATC 2 cut(s) 3, 523
Bsp19I CCATGG 1 cut(s) 209
BspACI CCGC 5 cut(s) 81, 264, 577, 685, 748
BspANI GGCC 2 cut(s) 208, 249
BspCNI CTCAG 1 cut(s) 667
BspFNI CGCG 1 cut(s) 703
BspLI GGNNCC 2 cut(s) 249, 669
BspT107I GGYRCC 1 cut(s) 667
BspTI CTTAAG 1 cut(s) 572
BsrBI CCGCTC 1 cut(s) 685
BsrI ACTGG 2 cut(s) 305, 642
BssECI CCNNGG 2 cut(s) 109, 209
BssMI GATC 2 cut(s) 3, 523
BssT1I CCWWGG 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 265, 447
BstAFI CTTAAG 1 cut(s) 572
BstBAI YACGTR 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 2 cut(s) 88, 675
BstDSI CCRYGG 2 cut(s) 109, 209
BstF5I GGATG 1 cut(s) 506
BstFNI CGCG 1 cut(s) 703
BstKTI GATC 2 cut(s) 6, 526
BstMBI GATC 2 cut(s) 3, 523
BstMCI CGRYCG 1 cut(s) 752
BstMWI GCNNNNNNNGC 2 cut(s) 78, 638
BstSLI GKGCMC 2 cut(s) 251, 634
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 1 cut(s) 757
BstV2I GAAGAC 2 cut(s) 85, 158
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 2 cut(s) 208, 249
BtgI CCRYGG 2 cut(s) 109, 209
BtsCI GGATG 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 247, 248
CspCI CAANNNNNGTGG 2 cut(s) 521, 556
CviAII CATG 4 cut(s) 210, 336, 377, 407
CviJI RGCY 7 cut(s) 72, 208, 249, 326, 476, 641, 657
CviKI_1 RGCY 7 cut(s) 72, 208, 249, 326, 476, 641, 657
DdeI CTNAG 2 cut(s) 88, 675
DpnI GATC 2 cut(s) 5, 525
DpnII GATC 2 cut(s) 3, 523
Eam1104I CTCTTC 2 cut(s) 265, 447
EarI CTCTTC 2 cut(s) 265, 447
Eco130I CCWWGG 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 170
Eco81I CCTNAGG 1 cut(s) 675
EcoT14I CCWWGG 1 cut(s) 209
EcoT38I GRGCYC 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 209
FaeI CATG 4 cut(s) 213, 339, 380, 410
FaiI YATR 9 cut(s) 35, 131, 211, 337, 378, 408, 512, 548, 662
FatI CATG 4 cut(s) 209, 335, 376, 406
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 82, 746
FokI GGATG 1 cut(s) 513
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 82, 746
FspBI CTAG 2 cut(s) 69, 561
GluI GCNGC 2 cut(s) 82, 746
HaeIII GGCC 2 cut(s) 208, 249
Hin1II CATG 4 cut(s) 213, 339, 380, 410
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 2 cut(s) 232, 601
HphI GGTGA 3 cut(s) 136, 241, 292
Hpy166II GTNNAC 3 cut(s) 23, 184, 223
Hpy188I TCNGA 7 cut(s) 8, 150, 298, 357, 373, 417, 606
Hpy188III TCNNGA 1 cut(s) 695
Hpy8I GTNNAC 3 cut(s) 23, 184, 223
HpyAV CCTTC 4 cut(s) 170, 372, 490, 748
HpyCH4IV ACGT 2 cut(s) 259, 349
HpyCH4V TGCA 1 cut(s) 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 638
HpyF3I CTNAG 2 cut(s) 88, 675
HpySE526I ACGT 2 cut(s) 259, 349
Hsp92II CATG 4 cut(s) 213, 339, 380, 410
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 2 cut(s) 3, 523
LmnI GCTCC 1 cut(s) 682
LpnPI CCDG 9 cut(s) 187, 264, 286, 312, 452, 466, 501, 623, 687
Lsp1109I GCAGC 1 cut(s) 757
MaeI CTAG 2 cut(s) 69, 561
MaeII ACGT 2 cut(s) 259, 349
MaeIII GTNAC 5 cut(s) 58, 124, 197, 462, 714
MalI GATC 2 cut(s) 5, 525
MbiI CCGCTC 1 cut(s) 685
MboI GATC 2 cut(s) 3, 523
MboII GAAGA 8 cut(s) 85, 137, 163, 282, 430, 433, 464, 740
MfeI CAATTG 1 cut(s) 384
MhlI GDGCHC 2 cut(s) 251, 634
MluCI AATT 3 cut(s) 102, 384, 446
MmeI TCCRAC 1 cut(s) 321
MseI TTAA 3 cut(s) 399, 492, 573
MspA1I CMGCKG 1 cut(s) 748
MspCI CTTAAG 1 cut(s) 572
MunI CAATTG 1 cut(s) 384
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 2 cut(s) 78, 638
NcoI CCATGG 1 cut(s) 209
NdeII GATC 2 cut(s) 3, 523
NlaIII CATG 4 cut(s) 213, 339, 380, 410
NlaIV GGNNCC 2 cut(s) 249, 669
NmuCI GTSAC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 232, 601
PkrI GCNGC 2 cut(s) 83, 747
Ppu21I YACGTR 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 249, 669
PspOMI GGGCCC 1 cut(s) 247
PspPI GGNCC 2 cut(s) 247, 248
SaqAI TTAA 3 cut(s) 399, 492, 573
SatI GCNGC 2 cut(s) 82, 746
Sau3AI GATC 2 cut(s) 3, 523
Sau96I GGNCC 2 cut(s) 247, 248
SduI GDGCHC 2 cut(s) 251, 634
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
Sse9I AATT 3 cut(s) 102, 384, 446
SsiI CCGC 5 cut(s) 81, 264, 577, 685, 748
SspMI CTAG 2 cut(s) 69, 561
StyI CCWWGG 1 cut(s) 209
TaiI ACGT 2 cut(s) 262, 352
TaqI TCGA 1 cut(s) 752
TasI AATT 3 cut(s) 102, 384, 446
TauI GCSGC 1 cut(s) 84
TfiI GAWTC 2 cut(s) 232, 601
Tru1I TTAA 3 cut(s) 399, 492, 573
Tru9I TTAA 3 cut(s) 399, 492, 573
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 745
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 131, 395
TspGWI ACGGA 2 cut(s) 98, 334
Vha464I CTTAAG 1 cut(s) 572
XapI RAATTY 2 cut(s) 102, 446
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 69, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.