Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000619

Physical Location & Seq

Genomic Coordinates Reverse (-)

61045091 .. 61053025

Gene Structure 7935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG381500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCTCCTGGTTTGGAAACTACTCCGGGGATGGATTCAGTCATTGATGGTGGATCAGATCTGCAAACAGCATTGATGGCTGATGGGTCTAGTTTTGGAATGATTGCTCTGAGTTCGGTCCCAGGAAGGAAGTGGTGTAATTTGGGTTCCAAGAGTTTGGAACATGATTGTATTATTCCATCATTGGGGGCGGAAAGTAAGATCGAGAAACCCGAGTTGACTTTGGAGGGGTCCTTAGATTTGGGGACAGCTGGCAGCCATCTTGATGATTATCAAAACAGAGCCCCAAGTCCTGCTGTGGCAACTTCAAAGCCTCCAAAGCATCCTAGGGTCCCAAAGGCTGCAAGGACAACAACATCTACTTCTAAAGGTGTGATTTGGGACTTGGCAACTCTAGTTCCAAATCTTGAATCGCCTGGTGTTGATCTTCTTTGTGCCAGTTTCCGACACCGTGCTCCGTTAAAGCAACGCAATCTCAGGCAAGAAACATATAAATTCCACAATGACATGCTCATTCTTGGCCCAGCTGTCCACAGAGACCTCAACAAGGTCAATCTGGGTGTGGACAAAGCACTCCAATTTTACTACCGGGTCGAAACCCATTTCGGATTCAACCACAATGAGCTAACTTGCAGAGATATGGCTATCATTTTGACTAAAGCGAATCGGTTGAAGGCCCTCTGGGATTTTCTCAAAGACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

234

Amino Acids

25.67

Weight (kDa)

7.73

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis	RchiOBHm_Chr3g0488921
rosa_multiflora	Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403950
rosa_rugosa	Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha	Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	185, 547
AflIII	ACRYGT	1 cut(s)	699
AgsI	TTSAA	4 cut(s)	309, 410, 613, 673
AjnI	CCWGG	3 cut(s)	7, 121, 415
AluBI	AGCT	3 cut(s)	251, 527, 625
AluI	AGCT	3 cut(s)	251, 527, 625
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	9, 531
AlwI	GGATC	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	520, 675
ApeKI	GCWGC	2 cut(s)	255, 341
ApoI	RAATTY	1 cut(s)	494
AspA2I	CCTAGG	1 cut(s)	326
AspS9I	GGNCC	5 cut(s)	118, 231, 331, 521, 676
AsuC2I	CCSGG	2 cut(s)	27, 590
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	3 cut(s)	118, 231, 331
AvrII	CCTAGG	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	2 cut(s)	267, 328
BccI	CCATC	6 cut(s)	25, 41, 70, 77, 187, 267
BciT130I	CCWGG	3 cut(s)	9, 123, 417
BcnI	CCSGG	2 cut(s)	27, 590
BcoDI	GTCTC	2 cut(s)	9, 531
BfaI	CTAG	3 cut(s)	90, 327, 395
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	2 cut(s)	256, 342
BlnI	CCTAGG	1 cut(s)	326
BlsI	GCNGC	2 cut(s)	257, 343
Bme1390I	CCNGG	5 cut(s)	9, 27, 123, 417, 590
Bme18I	GGWCC	3 cut(s)	118, 231, 331
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	5 cut(s)	118, 231, 331, 521, 676
BmiI	GGNNCC	5 cut(s)	120, 148, 232, 332, 333
BmrFI	CCNGG	5 cut(s)	9, 27, 123, 417, 590
BmsI	GCATC	1 cut(s)	331
BpuMI	CCSGG	2 cut(s)	27, 590
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	26, 121, 326
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 547
Bse1I	ACTGG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	3 cut(s)	9, 123, 417
BseDI	CCNNGG	3 cut(s)	26, 121, 326
BseGI	GGATG	2 cut(s)	36, 322
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	2 cut(s)	185, 547
BseMII	CTCAG	2 cut(s)	101, 490
BseNI	ACTGG	1 cut(s)	438
BseXI	GCAGC	2 cut(s)	267, 328
BseYI	CCCAGC	1 cut(s)	523
BshFI	GGCC	2 cut(s)	522, 677
BsiHKAI	GWGCWC	1 cut(s)	457
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	26, 589
BslFI	GGGAC	4 cut(s)	104, 259, 317, 395
BslI	CCNNNNNNNGG	2 cut(s)	185, 547
BsmAI	GTCTC	2 cut(s)	9, 531
BsmFI	GGGAC	4 cut(s)	104, 259, 317, 395
BsnI	GGCC	2 cut(s)	522, 677
Bso31I	GGTCTC	1 cut(s)	531
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	286, 457
Bsp143I	GATC	4 cut(s)	53, 58, 201, 424
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	2 cut(s)	522, 677
BspCNI	CTCAG	2 cut(s)	102, 489
BspLI	GGNNCC	5 cut(s)	120, 148, 232, 332, 333
BspPI	GGATC	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	438
BssECI	CCNNGG	3 cut(s)	26, 121, 326
BssMI	GATC	4 cut(s)	53, 58, 201, 424
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	3 cut(s)	9, 123, 417
Bst4CI	ACNGT	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	3 cut(s)	110, 235, 476
BstENI	CCTNNNNNAGG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	36, 322
BstKTI	GATC	4 cut(s)	56, 61, 204, 427
BstMAI	GTCTC	2 cut(s)	9, 531
BstMBI	GATC	4 cut(s)	53, 58, 201, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 319
BstNI	CCWGG	3 cut(s)	9, 123, 417
BstNSI	RCATGY	2 cut(s)	511, 703
BstSCI	CCNGG	5 cut(s)	7, 25, 121, 415, 588
BstV1I	GCAGC	2 cut(s)	267, 328
BstX2I	RGATCY	1 cut(s)	58
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	522, 677
BtsCI	GGATG	2 cut(s)	36, 322
Cac8I	GCNNGC	1 cut(s)	253
Cfr13I	GGNCC	5 cut(s)	118, 231, 331, 521, 676
CviAII	CATG	3 cut(s)	164, 508, 700
DdeI	CTNAG	3 cut(s)	110, 235, 476
DpnI	GATC	4 cut(s)	55, 60, 203, 426
DpnII	GATC	4 cut(s)	53, 58, 201, 424
EciI	GGCGGA	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	326
Eco24I	GRGCYC	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	3 cut(s)	118, 231, 331
Eco88I	CYCGRG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	545
EcoO109I	RGGNCCY	3 cut(s)	231, 331, 676
EcoRII	CCWGG	3 cut(s)	7, 121, 415
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	167, 511, 703
FaiI	YATR	6 cut(s)	165, 490, 492, 509, 641, 701
FaqI	GGGAC	4 cut(s)	104, 259, 317, 395
FatI	CATG	3 cut(s)	163, 507, 699
Fnu4HI	GCNGC	2 cut(s)	256, 342
FokI	GGATG	2 cut(s)	43, 309
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	256, 342
FspBI	CTAG	3 cut(s)	90, 327, 395
GluI	GCNGC	2 cut(s)	256, 342
GsaI	CCCAGC	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	522, 677
HapII	CCGG	2 cut(s)	26, 589
Hin1II	CATG	3 cut(s)	167, 511, 703
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HinfI	GANTC	4 cut(s)	35, 410, 609, 664
HpaII	CCGG	2 cut(s)	26, 589
Hpy166II	GTNNAC	3 cut(s)	219, 532, 565
Hpy188I	TCNGA	4 cut(s)	58, 111, 446, 608
Hpy188III	TCNNGA	3 cut(s)	205, 263, 407
Hpy8I	GTNNAC	3 cut(s)	219, 532, 565
HpyAV	CCTTC	2 cut(s)	120, 667
HpyCH4III	ACNGT	1 cut(s)	452
HpyCH4V	TGCA	3 cut(s)	64, 344, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 319
HpyF3I	CTNAG	3 cut(s)	110, 235, 476
Hsp92II	CATG	3 cut(s)	167, 511, 703
KflI	GGGWCCC	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	53, 58, 201, 424
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	2 cut(s)	267, 328
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	3 cut(s)	90, 327, 395
MalI	GATC	4 cut(s)	55, 60, 203, 426
MboI	GATC	4 cut(s)	53, 58, 201, 424
MboII	GAAGA	1 cut(s)	419
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	2 cut(s)	286, 457
MluCI	AATT	3 cut(s)	139, 494, 578
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	4 cut(s)	220, 324, 551, 689
MseI	TTAA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	251, 527
MspI	CCGG	2 cut(s)	26, 589
MspR9I	CCNGG	5 cut(s)	9, 27, 123, 417, 590
MvaI	CCWGG	3 cut(s)	9, 123, 417
MwoI	GCNNNNNNNGC	2 cut(s)	77, 319
NciI	CCSGG	2 cut(s)	27, 590
NdeII	GATC	4 cut(s)	53, 58, 201, 424
NlaIII	CATG	3 cut(s)	167, 511, 703
NlaIV	GGNNCC	5 cut(s)	120, 148, 232, 332, 333
NspI	RCATGY	2 cut(s)	511, 703
PciI	ACATGT	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	35, 410, 609, 664
PkrI	GCNGC	2 cut(s)	257, 343
PpuMI	RGGWCCY	2 cut(s)	231, 331
PscI	ACATGT	1 cut(s)	699
Psp5II	RGGWCCY	2 cut(s)	231, 331
Psp6I	CCWGG	3 cut(s)	7, 121, 415
PspFI	CCCAGC	1 cut(s)	523
PspGI	CCWGG	3 cut(s)	7, 121, 415
PspN4I	GGNNCC	5 cut(s)	120, 148, 232, 332, 333
PspPI	GGNCC	5 cut(s)	118, 231, 331, 521, 676
PspPPI	RGGWCCY	2 cut(s)	231, 331
PsrI	GAACNNNNNNTAC	2 cut(s)	130, 162
PsuI	RGATCY	1 cut(s)	58
PvuII	CAGCTG	2 cut(s)	251, 527
RseI	CAYNNNNRTG	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	2 cut(s)	256, 342
Sau3AI	GATC	4 cut(s)	53, 58, 201, 424
Sau96I	GGNCC	5 cut(s)	118, 231, 331, 521, 676
ScrFI	CCNGG	5 cut(s)	9, 27, 123, 417, 590
SduI	GDGCHC	2 cut(s)	286, 457
SetI	ASST	6 cut(s)	253, 373, 529, 543, 552, 627
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	3 cut(s)	118, 231, 331
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	3 cut(s)	139, 494, 578
SsiI	CCGC	1 cut(s)	191
SspMI	CTAG	3 cut(s)	90, 327, 395
StyD4I	CCNGG	5 cut(s)	7, 25, 121, 415, 588
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	452
TaqI	TCGA	2 cut(s)	204, 594
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	3 cut(s)	139, 494, 578
TfiI	GAWTC	4 cut(s)	35, 410, 609, 664
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TseI	GCWGC	2 cut(s)	255, 341
TspGWI	ACGGA	1 cut(s)	447
VpaK11BI	GGWCC	3 cut(s)	118, 231, 331
XagI	CCTNNNNNAGG	1 cut(s)	545
XapI	RAATTY	1 cut(s)	494
XceI	RCATGY	2 cut(s)	511, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XmaJI	CCTAGG	1 cut(s)	326
XspI	CTAG	3 cut(s)	90, 327, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.