Rh3CG366000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000619
Physical Location & Seq
Forward (+)
46032675 .. 46059854
27180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG366000.1

Sequence Viewer

Length: 756 bp
ATGACAGTACCGGAATTTCCGACCATTGGGTTGATCAGATCTCGAGAGGAGCGGGATTCGGAGTTTACCCAACGGGAATCTCCGTCGGAGGATGCTATGGAGGTTGAAGATGGTGGGGACGCGGGGAGTTTGGTGGAGTCAGCTCCTAAGCGGCGGCGCTTGGAGGAGAGGCGACGGCCGGCTTTGGCTGTGGAAGAGGTTCAACTGACGGAGGTACCCATTTTGGAATGCACGGATTTGTCGGCGGCGTTGACTTCGAAGACCTCTGTCACGTCGTCAATCTCTGAGTCACCATTGAATGCGATCCCTGCTTTCCGGGGGCTGAAATCAGCTCCTGCAATCTTGGGAGGCATTAATACTAATCAGAGCGAAGTGGGGGTCTTCTCTTCCGGGGAATCAGCTGGAGTTAATTACAAGCGGGTTGGGCCCATTGCTGGGGTGATAAATTCAATGGTACCGGCCCAGAAAACTAAGTTGAAGAAATTTCAAGAGGGGACTCAGAAGCGGGCCACTCTGAGTCCCGGGTTGGCCCGGCCTGGTGTACGGGGTCCGTCCATGCATGGGGAGGGGTGGTCTTGTGAGCATGGGTTGAGTTCAAAAGAGGTGGGTGATACGTGCCTGCATGGGGAGGGGTTGTCTTGTGCGAAAGGGTTGGGTTCAAAAAAGGTTGGTGAGACGTGCATGCATGGGGAGGGGTTGTCTTGTGAGCCCCTTTTCTTGCTGAATGATCCTGCAACTTATCTGATTTTCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

26.73

Weight (kDa)

5.72

Isoelectric Point (pI)

67.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 214, 454
AccB1I GGYRCC 2 cut(s) 214, 454
AccBSI CCGCTC 1 cut(s) 52
AccII CGCG 1 cut(s) 122
AciI CCGC 7 cut(s) 52, 122, 151, 154, 245, 418, 505
AclWI GGATC 2 cut(s) 298, 722
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 3 cut(s) 14, 445, 482
AfaI GTAC 4 cut(s) 9, 216, 456, 543
AfiI CCNNNNNNNGG 5 cut(s) 26, 434, 435, 561, 625
AgsI TTSAA 8 cut(s) 107, 203, 298, 450, 478, 488, 597, 660
AjiI CACGTC 2 cut(s) 273, 678
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 3 cut(s) 143, 332, 401
AluI AGCT 3 cut(s) 143, 332, 401
Alw26I GTCTC 1 cut(s) 668
AlwI GGATC 2 cut(s) 298, 722
AlwNI CAGNNNCTG 1 cut(s) 335
Ama87I CYCGRG 2 cut(s) 42, 521
AoxI GGCC 6 cut(s) 176, 425, 459, 507, 528, 533
ApaI GGGCCC 1 cut(s) 429
ApoI RAATTY 3 cut(s) 14, 445, 482
ArsI GACNNNNNNTTYG 2 cut(s) 363, 395
AseI ATTAAT 1 cut(s) 354
Asp700I GAANNNNTTC 1 cut(s) 198
Asp718I GGTACC 2 cut(s) 214, 454
AspLEI GCGC 1 cut(s) 159
AspS9I GGNCC 6 cut(s) 425, 426, 460, 507, 529, 548
AsuC2I CCSGG 5 cut(s) 317, 391, 522, 523, 532
AsuHPI GGTGA 4 cut(s) 282, 451, 620, 683
AsuII TTCGAA 1 cut(s) 257
AvaI CYCGRG 2 cut(s) 42, 521
AvaII GGWCC 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 429
BaeI ACNNNNGTAYC 2 cut(s) 198, 231
BanI GGYRCC 2 cut(s) 214, 454
BanII GRGCYC 2 cut(s) 429, 711
BbsI GAAGAC 2 cut(s) 266, 373
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 191
BciT130I CCWGG 1 cut(s) 537
BclI TGATCA 1 cut(s) 33
BcnI CCSGG 5 cut(s) 317, 391, 522, 523, 532
BcoDI GTCTC 1 cut(s) 668
BfoI RGCGCY 1 cut(s) 160
BglII AGATCT 1 cut(s) 38
BisI GCNGC 3 cut(s) 152, 155, 246
BlsI GCNGC 3 cut(s) 153, 156, 247
Bme1390I CCNGG 6 cut(s) 317, 391, 522, 523, 532, 537
Bme18I GGWCC 1 cut(s) 548
BmeT110I CYCGRG 2 cut(s) 42, 521
BmgBI CACGTC 2 cut(s) 273, 678
BmgT120I GGNCC 6 cut(s) 425, 426, 460, 507, 529, 548
BmiI GGNNCC 4 cut(s) 216, 427, 456, 549
BmrFI CCNGG 6 cut(s) 317, 391, 522, 523, 532, 537
BmsI GCATC 1 cut(s) 82
BoxI GACNNNNGTC 1 cut(s) 266
BpiI GAAGAC 2 cut(s) 266, 373
BpmI CTGGAG 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 147
Bpu14I TTCGAA 1 cut(s) 257
BpuMI CCSGG 5 cut(s) 317, 391, 522, 523, 532
BsaAI YACGTR 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 316, 390, 521
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 6 cut(s) 557, 587, 620, 650, 683, 713
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 434, 435, 561, 625
Bse118I RCCGGY 2 cut(s) 178, 457
Bse3DI GCAATG 1 cut(s) 429
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 316, 390, 521
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 5 cut(s) 26, 434, 435, 561, 625
BseMI GCAATG 1 cut(s) 429
BseMII CTCAG 3 cut(s) 276, 506, 512
BseRI GAGGAG 2 cut(s) 62, 179
BseSI GKGCMC 1 cut(s) 429
BseX3I CGGCCG 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 434
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 179
BshFI GGCC 6 cut(s) 178, 427, 461, 509, 530, 535
BshNI GGYRCC 2 cut(s) 214, 454
BsiEI CGRYCG 1 cut(s) 179
BsiHKCI CYCGRG 2 cut(s) 42, 521
BsiSI CCGG 7 cut(s) 11, 179, 316, 390, 458, 522, 532
BslFI GGGAC 3 cut(s) 131, 504, 508
BslI CCNNNNNNNGG 5 cut(s) 26, 434, 435, 561, 625
BsmAI GTCTC 1 cut(s) 668
BsmBI CGTCTC 1 cut(s) 668
BsmFI GGGAC 3 cut(s) 131, 504, 508
BsmI GAATGC 2 cut(s) 233, 304
BsnI GGCC 6 cut(s) 178, 427, 461, 509, 530, 535
BsoBI CYCGRG 2 cut(s) 42, 521
Bsp119I TTCGAA 1 cut(s) 257
Bsp120I GGGCCC 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 429, 711
Bsp143I GATC 4 cut(s) 33, 38, 303, 727
BspACI CCGC 7 cut(s) 52, 122, 151, 154, 245, 418, 505
BspANI GGCC 6 cut(s) 178, 427, 461, 509, 530, 535
BspCNI CTCAG 3 cut(s) 277, 507, 511
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 4 cut(s) 216, 427, 456, 549
BspPI GGATC 2 cut(s) 298, 722
BspT104I TTCGAA 1 cut(s) 257
BspT107I GGYRCC 2 cut(s) 214, 454
BsrBI CCGCTC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 429
BsrFI RCCGGY 2 cut(s) 178, 457
BssAI RCCGGY 2 cut(s) 178, 457
BssECI CCNNGG 3 cut(s) 316, 390, 521
BssMI GATC 4 cut(s) 33, 38, 303, 727
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 2 cut(s) 189, 391
BstBAI YACGTR 1 cut(s) 615
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 4 cut(s) 180, 507, 620, 683
BstDEI CTNAG 5 cut(s) 147, 285, 471, 498, 515
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 4 cut(s) 36, 41, 306, 730
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 4 cut(s) 33, 38, 303, 727
BstMCI CGRYCG 1 cut(s) 179
BstMWI GCNNNNNNNGC 2 cut(s) 308, 424
BstNI CCWGG 1 cut(s) 537
BstNSI RCATGY 1 cut(s) 685
BstPAI GACNNNNGTC 1 cut(s) 266
BstSCI CCNGG 6 cut(s) 315, 389, 520, 521, 530, 535
BstSLI GKGCMC 1 cut(s) 429
BstUI CGCG 1 cut(s) 122
BstV2I GAAGAC 2 cut(s) 266, 373
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BstZI CGGCCG 1 cut(s) 176
BsuRI GGCC 6 cut(s) 178, 427, 461, 509, 530, 535
BtrI CACGTC 2 cut(s) 273, 678
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 4 cut(s) 180, 507, 620, 683
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 1 cut(s) 159
Cfr10I RCCGGY 2 cut(s) 178, 457
Cfr13I GGNCC 6 cut(s) 425, 426, 460, 507, 529, 548
Cfr9I CCCGGG 1 cut(s) 521
CseI GACGC 1 cut(s) 128
Csp6I GTAC 4 cut(s) 8, 215, 455, 542
CspCI CAANNNNNGTGG 2 cut(s) 585, 620
CviAII CATG 6 cut(s) 556, 560, 584, 623, 682, 686
CviQI GTAC 4 cut(s) 8, 215, 455, 542
DdeI CTNAG 5 cut(s) 147, 285, 471, 498, 515
DpnI GATC 4 cut(s) 35, 40, 305, 729
DpnII GATC 4 cut(s) 33, 38, 303, 727
EaeI YGGCCR 1 cut(s) 176
EagI CGGCCG 1 cut(s) 176
Eam1104I CTCTTC 2 cut(s) 189, 391
EarI CTCTTC 2 cut(s) 189, 391
EclXI CGGCCG 1 cut(s) 176
Eco24I GRGCYC 2 cut(s) 429, 711
Eco47I GGWCC 1 cut(s) 548
Eco52I CGGCCG 1 cut(s) 176
Eco88I CYCGRG 2 cut(s) 42, 521
EcoRII CCWGG 1 cut(s) 535
EcoT22I ATGCAT 2 cut(s) 561, 687
EcoT38I GRGCYC 2 cut(s) 429, 711
Esp3I CGTCTC 1 cut(s) 668
FaeI CATG 6 cut(s) 559, 563, 587, 626, 685, 689
FaiI YATR 7 cut(s) 98, 557, 561, 585, 624, 683, 687
FaqI GGGAC 3 cut(s) 131, 504, 508
FatI CATG 6 cut(s) 555, 559, 583, 622, 681, 685
FauI CCCGC 4 cut(s) 45, 115, 411, 498
FbaI TGATCA 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 152, 155, 246
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 2 cut(s) 429, 711
Fsp4HI GCNGC 3 cut(s) 152, 155, 246
GlaI GCGC 1 cut(s) 158
GluI GCNGC 3 cut(s) 152, 155, 246
GsaI CCCAGC 1 cut(s) 438
GsuI CTGGAG 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 6 cut(s) 178, 427, 461, 509, 530, 535
HapII CCGG 7 cut(s) 11, 179, 316, 390, 458, 522, 532
HgaI GACGC 1 cut(s) 128
HhaI GCGC 1 cut(s) 159
Hin1II CATG 6 cut(s) 559, 563, 587, 626, 685, 689
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 7 cut(s) 56, 77, 137, 287, 395, 496, 517
HpaII CCGG 7 cut(s) 11, 179, 316, 390, 458, 522, 532
HphI GGTGA 4 cut(s) 282, 451, 620, 683
Hpy166II GTNNAC 3 cut(s) 66, 252, 542
Hpy188I TCNGA 9 cut(s) 21, 38, 61, 88, 286, 366, 501, 516, 744
Hpy188III TCNNGA 3 cut(s) 42, 44, 488
Hpy8I GTNNAC 3 cut(s) 66, 252, 542
Hpy99I CGWCG 3 cut(s) 88, 177, 277
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 3 cut(s) 272, 614, 677
HpyCH4V TGCA 7 cut(s) 231, 338, 559, 622, 681, 685, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 424
HpyF3I CTNAG 5 cut(s) 147, 285, 471, 498, 515
HpySE526I ACGT 3 cut(s) 272, 614, 677
Hsp92II CATG 6 cut(s) 559, 563, 587, 626, 685, 689
HspAI GCGC 1 cut(s) 157
KpnI GGTACC 2 cut(s) 218, 458
KroI GCCGGC 1 cut(s) 178
KroNI GCCGGC 1 cut(s) 180
Ksp22I TGATCA 1 cut(s) 33
Kzo9I GATC 4 cut(s) 33, 38, 303, 727
LmnI GCTCC 3 cut(s) 49, 148, 337
LweI GCATC 1 cut(s) 82
MaeII ACGT 3 cut(s) 272, 614, 677
MaeIII GTNAC 2 cut(s) 268, 288
MalI GATC 4 cut(s) 35, 40, 305, 729
MbiI CCGCTC 1 cut(s) 52
MboI GATC 4 cut(s) 33, 38, 303, 727
MboII GAAGA 6 cut(s) 119, 206, 271, 373, 378, 490
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 429, 711
MluCI AATT 4 cut(s) 14, 409, 445, 482
MlyI GAGTC 4 cut(s) 146, 296, 490, 526
MmeI TCCRAC 2 cut(s) 44, 66
Mph1103I ATGCAT 2 cut(s) 561, 687
MroNI GCCGGC 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 2 cut(s) 354, 408
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 7 cut(s) 11, 179, 316, 390, 458, 522, 532
MspR9I CCNGG 6 cut(s) 317, 391, 522, 523, 532, 537
Mva1269I GAATGC 2 cut(s) 233, 304
MvaI CCWGG 1 cut(s) 537
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 308, 424
NaeI GCCGGC 1 cut(s) 180
NciI CCSGG 5 cut(s) 317, 391, 522, 523, 532
NdeII GATC 4 cut(s) 33, 38, 303, 727
NgoMIV GCCGGC 1 cut(s) 178
NlaIII CATG 6 cut(s) 559, 563, 587, 626, 685, 689
NlaIV GGNNCC 4 cut(s) 216, 427, 456, 549
NmuCI GTSAC 2 cut(s) 268, 288
NsiI ATGCAT 2 cut(s) 561, 687
NspI RCATGY 1 cut(s) 685
NspV TTCGAA 1 cut(s) 257
PaeI GCATGC 1 cut(s) 685
PaeR7I CTCGAG 1 cut(s) 42
PctI GAATGC 2 cut(s) 233, 304
PdiI GCCGGC 1 cut(s) 180
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 3 cut(s) 56, 77, 395
PkrI GCNGC 3 cut(s) 153, 156, 247
PleI GAGTC 4 cut(s) 145, 295, 490, 525
PpsI GAGTC 4 cut(s) 145, 295, 490, 525
Ppu21I YACGTR 1 cut(s) 615
PshAI GACNNNNGTC 1 cut(s) 266
PshBI ATTAAT 1 cut(s) 354
Psp6I CCWGG 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 434
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 4 cut(s) 216, 427, 456, 549
PspOMI GGGCCC 1 cut(s) 425
PspPI GGNCC 6 cut(s) 425, 426, 460, 507, 529, 548
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 4 cut(s) 9, 216, 456, 543
RsaNI GTAC 4 cut(s) 8, 215, 455, 542
SaqAI TTAA 2 cut(s) 354, 408
SatI GCNGC 3 cut(s) 152, 155, 246
Sau3AI GATC 4 cut(s) 33, 38, 303, 727
Sau96I GGNCC 6 cut(s) 425, 426, 460, 507, 529, 548
SchI GAGTC 4 cut(s) 146, 296, 490, 526
ScrFI CCNGG 6 cut(s) 317, 391, 522, 523, 532, 537
SduI GDGCHC 2 cut(s) 429, 711
SfaNI GCATC 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 1 cut(s) 548
SlaI CTCGAG 1 cut(s) 42
SmaI CCCGGG 1 cut(s) 523
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
SphI GCATGC 1 cut(s) 685
Sse9I AATT 4 cut(s) 14, 409, 445, 482
SsiI CCGC 7 cut(s) 52, 122, 151, 154, 245, 418, 505
StyD4I CCNGG 6 cut(s) 315, 389, 520, 521, 530, 535
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 3 cut(s) 275, 617, 680
TaqI TCGA 2 cut(s) 43, 257
TasI AATT 4 cut(s) 14, 409, 445, 482
TauI GCSGC 3 cut(s) 154, 157, 248
TfiI GAWTC 3 cut(s) 56, 77, 395
Tru1I TTAA 2 cut(s) 354, 408
Tru9I TTAA 2 cut(s) 354, 408
TseFI GTSAC 2 cut(s) 268, 288
Tsp45I GTSAC 2 cut(s) 268, 288
TspGWI ACGGA 4 cut(s) 72, 224, 248, 540
TspMI CCCGGG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 548
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 3 cut(s) 14, 445, 482
XceI RCATGY 1 cut(s) 685
XhoI CTCGAG 1 cut(s) 42
XmaI CCCGGG 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 198
Zsp2I ATGCAT 2 cut(s) 561, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.