Rmu_sc0021371.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021371.1
OG0000619
Physical Location & Seq
Reverse (-)
21235 .. 21762
528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021371.1_g000006.1.cds

Sequence Viewer

Length: 528 bp
atgtcagatcatcttccgattctccttgaggtgcgtgagttcaagcagcgaaagaagaagacaaaacgaaggttcaggtttgaggagttctggattcatgaggcggagtgtaaaagtgttgttgaacgtggttgggatagcggtgatggtcctgatcctttttcgaaaatatgcaataagataagaatgaccagaaatggcctagaaaagtggagttcagataagtttaggagtctgactcgtgcaattgaggatacacgtgccaagttggcagctttttatgatgtaacgcagcaggtctccctccccgtttcgctcagaatagagttagaaacaagactgagtgatcttctgcaccaagaaatgctattctggaaacaacacgctaaagtcttttggttaaaagaaggggatgctaacacacggttttttcatcagagtgcgactaatagacgccgtacgaatactatatctgggcttttcaacgaggcaggaacttggtgcactagtgatgaccagttagagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

175

Amino Acids

20.76

Weight (kDa)

9.22

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AciI CCGC 2 cut(s) 104, 141
AclWI GGATC 1 cut(s) 149
AcvI CACGTG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 454
AfaI GTAC 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 3 cut(s) 43, 125, 484
AhlI ACTAGT 1 cut(s) 506
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 304
Alw44I GTGCAC 1 cut(s) 502
AlwI GGATC 1 cut(s) 149
AoxI GGCC 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 502
ApeKI GCWGC 3 cut(s) 46, 272, 292
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 155
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 506
BauI CACGAG 1 cut(s) 240
BbrPI CACGTG 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 506
BbvI GCAGC 3 cut(s) 58, 284, 304
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 441
BciVI GTATCC 1 cut(s) 247
BcoDI GTCTC 1 cut(s) 304
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 2 cut(s) 203, 507
BfuAI ACCTGC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 247
BglI GCCNNNNNGGC 1 cut(s) 269
BisI GCNGC 3 cut(s) 47, 273, 293
BlsI GCNGC 3 cut(s) 48, 274, 294
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 65
BplI GAGNNNNNCTC 2 cut(s) 223, 255
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 47
BsaAI YACGTR 1 cut(s) 260
BsaHI GRCGYC 1 cut(s) 454
BsaI GGTCTC 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 517
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 2 cut(s) 331, 332
BseNI ACTGG 1 cut(s) 517
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 3 cut(s) 58, 284, 304
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 506
BsiWI CGTACG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 304
BsnI GGCC 1 cut(s) 201
Bso31I GGTCTC 1 cut(s) 304
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 3 cut(s) 7, 154, 346
BspACI CCGC 2 cut(s) 104, 141
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 330, 333
BspHI TCATGA 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 304
BsrI ACTGG 1 cut(s) 517
BssMI GATC 3 cut(s) 7, 154, 346
BssNI GRCGYC 1 cut(s) 454
BssSI CACGAG 1 cut(s) 240
Bst2BI CACGAG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 426
BstACI GRCGYC 1 cut(s) 454
BstBAI YACGTR 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 164
BstDEI CTNAG 2 cut(s) 317, 341
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 3 cut(s) 10, 157, 349
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 3 cut(s) 7, 154, 346
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSLI GKGCMC 1 cut(s) 506
BstV1I GCAGC 3 cut(s) 58, 284, 304
BstV2I GAAGAC 1 cut(s) 65
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 286
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 149
CseI GACGC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 459
CviAII CATG 1 cut(s) 98
CviJI RGCY 3 cut(s) 201, 275, 478
CviKI_1 RGCY 3 cut(s) 201, 275, 478
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 2 cut(s) 317, 341
DpnI GATC 3 cut(s) 9, 156, 348
DpnII GATC 3 cut(s) 7, 154, 346
EciI GGCGGA 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 149
Eco72I CACGTG 1 cut(s) 260
FaeI CATG 1 cut(s) 101
FaiI YATR 4 cut(s) 99, 172, 282, 470
FatI CATG 1 cut(s) 97
Fnu4HI GCNGC 3 cut(s) 47, 273, 293
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 3 cut(s) 47, 273, 293
FspBI CTAG 2 cut(s) 203, 507
GluI GCNGC 3 cut(s) 47, 273, 293
HaeIII GGCC 1 cut(s) 201
HgaI GACGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 1 cut(s) 101
HinfI GANTC 4 cut(s) 19, 94, 232, 238
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 6 cut(s) 7, 18, 220, 237, 320, 438
Hpy188III TCNNGA 4 cut(s) 91, 98, 152, 373
Hpy8I GTNNAC 1 cut(s) 504
HpyAV CCTTC 2 cut(s) 63, 401
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4IV ACGT 2 cut(s) 127, 259
HpyCH4V TGCA 4 cut(s) 174, 245, 355, 504
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 317, 341
HpySE526I ACGT 2 cut(s) 127, 259
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 1 cut(s) 101
Kzo9I GATC 3 cut(s) 7, 154, 346
LpnPI CCDG 8 cut(s) 61, 76, 165, 205, 281, 358, 459, 477
Lsp1109I GCAGC 3 cut(s) 58, 284, 304
LweI GCATC 1 cut(s) 403
MaeI CTAG 2 cut(s) 203, 507
MaeII ACGT 2 cut(s) 127, 259
MaeIII GTNAC 1 cut(s) 286
MalI GATC 3 cut(s) 9, 156, 348
MboI GATC 3 cut(s) 7, 154, 346
MboII GAAGA 4 cut(s) 5, 67, 70, 341
MfeI CAATTG 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 1 cut(s) 246
MlyI GAGTC 2 cut(s) 232, 241
MnlI CCTC 6 cut(s) 22, 76, 94, 244, 314, 481
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 1 cut(s) 438
MunI CAATTG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 3 cut(s) 7, 154, 346
NlaIII CATG 1 cut(s) 101
NspV TTCGAA 1 cut(s) 164
PagI TCATGA 1 cut(s) 97
PfeI GAWTC 2 cut(s) 19, 94
Pfl23II CGTACG 1 cut(s) 458
PkrI GCNGC 3 cut(s) 48, 274, 294
PleI GAGTC 2 cut(s) 232, 240
PmaCI CACGTG 1 cut(s) 260
PmlI CACGTG 1 cut(s) 260
PpsI GAGTC 2 cut(s) 232, 240
Ppu21I YACGTR 1 cut(s) 260
PspCI CACGTG 1 cut(s) 260
PspLI CGTACG 1 cut(s) 458
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 3 cut(s) 47, 273, 293
Sau3AI GATC 3 cut(s) 7, 154, 346
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 232, 241
SduI GDGCHC 1 cut(s) 506
SetI ASST 7 cut(s) 33, 74, 80, 130, 262, 277, 300
SfaNI GCATC 1 cut(s) 403
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 1 cut(s) 246
SsiI CCGC 2 cut(s) 104, 141
SspMI CTAG 2 cut(s) 203, 507
TaaI ACNGT 1 cut(s) 426
TaiI ACGT 2 cut(s) 130, 262
TaqI TCGA 1 cut(s) 164
TasI AATT 1 cut(s) 246
TfiI GAWTC 2 cut(s) 19, 94
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TseI GCWGC 3 cut(s) 46, 272, 292
TspDTI ATGAA 2 cut(s) 86, 422
VneI GTGCAC 1 cut(s) 502
VpaK11BI GGWCC 1 cut(s) 149
XspI CTAG 2 cut(s) 203, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.