Rmu_sc0014510.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014510.1
OG0000619
Physical Location & Seq
Forward (+)
34584 .. 34895
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014510.1_g000008.1.cds

Sequence Viewer

Length: 312 bp
atgccttgggtgctaggtggtgactttaacgaaattttgtataatagtgataaggaagggggtccgttacgctatgatagacgaatggatgggttccgagatgtggtagaagttttttccttgaaagacattgggttcacagggccgtgcttcacgtggaaagggaagagaggtggagagatgataaagataagattggataggtttcttgtatccccaagttggcatgatctgttcccggtttccaagattattcatcaactacctaacaagtctgaccacctccccatcttgttggaggttagagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

103

Amino Acids

11.94

Weight (kDa)

7.91

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 33
AcvI CACGTG 1 cut(s) 156
AfiI CCNNNNNNNGG 2 cut(s) 103, 222
AgsI TTSAA 1 cut(s) 124
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 62, 143
AsuC2I CCSGG 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 62
BbrPI CACGTG 1 cut(s) 156
BccI CCATC 2 cut(s) 83, 296
BceAI ACGGC 1 cut(s) 130
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 239
BfaI CTAG 1 cut(s) 14
BfuI GTATCC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 62, 143
BmiI GGNNCC 2 cut(s) 63, 95
BmrFI CCNGG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 239
BsaAI YACGTR 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 222
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 103, 222
BshFI GGCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 103, 222
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 63, 95
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 5
Bst6I CTCTTC 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 156
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 295
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 1 cut(s) 94
Cfr13I GGNCC 2 cut(s) 62, 143
CviAII CATG 1 cut(s) 227
CviJI RGCY 1 cut(s) 145
CviKI_1 RGCY 1 cut(s) 145
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
Eco130I CCWWGG 1 cut(s) 5
Eco47I GGWCC 1 cut(s) 62
Eco72I CACGTG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 5
ErhI CCWWGG 1 cut(s) 5
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 42, 75, 228
FatI CATG 1 cut(s) 226
FokI GGATG 1 cut(s) 101
FspBI CTAG 1 cut(s) 14
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 239
Hin1II CATG 1 cut(s) 230
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 98, 277
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 230
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 2 cut(s) 126, 252
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 20, 66
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 178
MluCI AATT 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 3 cut(s) 164, 292, 293
MseI TTAA 1 cut(s) 27
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 10
NciI CCSGG 1 cut(s) 239
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 2 cut(s) 63, 95
NmuCI GTSAC 1 cut(s) 20
PmaCI CACGTG 1 cut(s) 156
PmlI CACGTG 1 cut(s) 156
Ppu21I YACGTR 1 cut(s) 156
PspCI CACGTG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 63, 95
PspPI GGNCC 2 cut(s) 62, 143
SaqAI TTAA 1 cut(s) 27
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 2 cut(s) 62, 143
ScrFI CCNGG 1 cut(s) 239
SetI ASST 7 cut(s) 19, 158, 175, 206, 268, 285, 303
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 33
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 237
StyI CCWWGG 1 cut(s) 5
TaiI ACGT 1 cut(s) 158
TasI AATT 1 cut(s) 33
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 245
TspGWI ACGGA 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 33
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.