Rmu_sc0001636.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001636.1
OG0000619
Physical Location & Seq
Reverse (-)
1 .. 1865
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001636.1_g000001.1.cds

Sequence Viewer

Length: 774 bp
atgccaaaatctgtctacgatgagttgatgaatgcggaaaagaaagaagcttggattacaaggtcgggaggtttagaaaatgttacagaagtgagtggaggtggtggtgttcactttggtttgcggagtgcactgaagaaggaggagaatgtgggattgcggtttggtttgctgacagaagctgacgacactaaaccggagcagttagacggttgtccggatggggagttgggcagtttacactctaggcagttgagtagtttcccttccaagaattttgactccataatctgtggacttgaagataagtccaaaaatacaaagttgtggatcatgataattccaccaaaaagggacgacttcaatgagattatcagaatggatgaaaaggaaggaggtcacccgcgctgttgcaggcaaatgaaggagttccgagactaccttaaggagtgtggggtttgggacttgaattttgtgggacctaaattcacttggaggggtaagcgtcatggggaggagatcagagttagacatgatcgatttgtagcctccaaggaatggactgacttattcccagcatctagagtgatacatctgaatcctagtaagtctgaccacttaccgattttgctagaggtgcgattctcacttcaaaagaaaaagaagaaaaaaagaagatttcgttttgaagaacagtggttacttgacactgaatgtgagaagatggttacgttgggttggaatggtgactctggagagtctcctttttccttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

258

Amino Acids

29.77

Weight (kDa)

8.15

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 558
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 406
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 4 cut(s) 35, 124, 160, 404
AclWI GGATC 1 cut(s) 338
AcsI RAATTY 3 cut(s) 274, 469, 485
AcuI CTGAAG 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 558
AflII CTTAAG 1 cut(s) 443
AgsI TTSAA 5 cut(s) 302, 364, 469, 653, 689
AluBI AGCT 2 cut(s) 50, 182
AluI AGCT 2 cut(s) 50, 182
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 2 cut(s) 429, 765
Alw44I GTGCAC 1 cut(s) 129
AlwI GGATC 1 cut(s) 338
AlwNI CAGNNNCTG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 129
ApoI RAATTY 3 cut(s) 274, 469, 485
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
Asp700I GAANNNNTTC 1 cut(s) 428
AspLEI GCGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 392, 758
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 133
BarI GAAGNNNNNNTAC 2 cut(s) 250, 282
Bbv12I GWGCWC 1 cut(s) 133
BccI CCATC 2 cut(s) 215, 718
BcoDI GTCTC 2 cut(s) 429, 765
BfaI CTAG 4 cut(s) 246, 582, 603, 632
BfrI CTTAAG 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 480
BmsI GCATC 1 cut(s) 587
BoxI GACNNNNGTC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 774
Bsa29I ATCGAT 1 cut(s) 538
BsaJI CCNNGG 1 cut(s) 552
BsaWI WCCGGW 2 cut(s) 196, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 217
BseCI ATCGAT 1 cut(s) 538
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 2 cut(s) 226, 388
BseLI CCNNNNNNNGG 1 cut(s) 558
BseRI GAGGAG 2 cut(s) 158, 530
BseSI GKGCMC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 574
Bsh1236I CGCG 1 cut(s) 406
BshVI ATCGAT 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 2 cut(s) 197, 218
BslFI GGGAC 3 cut(s) 368, 476, 492
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 2 cut(s) 429, 765
BsmFI GGGAC 3 cut(s) 368, 476, 492
BsmI GAATGC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 133
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 3 cut(s) 330, 519, 535
BspACI CCGC 4 cut(s) 35, 124, 160, 404
BspDI ATCGAT 1 cut(s) 538
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 1 cut(s) 406
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 480
BspPI GGATC 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 443
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 3 cut(s) 330, 519, 535
BssT1I CCWWGG 1 cut(s) 552
Bst4CI ACNGT 2 cut(s) 212, 696
BstAFI CTTAAG 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 416
BstEII GGTNACC 1 cut(s) 398
BstF5I GGATG 2 cut(s) 226, 388
BstFNI CGCG 1 cut(s) 406
BstHHI GCGC 1 cut(s) 408
BstKTI GATC 3 cut(s) 333, 522, 538
BstMAI GTCTC 2 cut(s) 429, 765
BstMBI GATC 3 cut(s) 330, 519, 535
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstPAI GACNNNNGTC 1 cut(s) 213
BstPI GGTNACC 1 cut(s) 398
BstSLI GKGCMC 1 cut(s) 133
BstUI CGCG 1 cut(s) 406
Bsu15I ATCGAT 1 cut(s) 538
BsuTUI ATCGAT 1 cut(s) 538
BtsCI GGATG 2 cut(s) 226, 388
BtsIMutI CAGTG 3 cut(s) 131, 701, 708
Cac8I GCNNGC 1 cut(s) 416
CaiI CAGNNNCTG 1 cut(s) 182
CciI TCATGA 1 cut(s) 333
CfoI GCGC 1 cut(s) 408
Cfr13I GGNCC 1 cut(s) 479
ClaI ATCGAT 1 cut(s) 538
CseI GACGC 1 cut(s) 494
CviAII CATG 3 cut(s) 334, 509, 533
CviJI RGCY 3 cut(s) 50, 182, 548
CviKI_1 RGCY 3 cut(s) 50, 182, 548
DpnI GATC 3 cut(s) 332, 521, 537
DpnII GATC 3 cut(s) 330, 519, 535
Eco130I CCWWGG 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 398
EcoO109I RGGNCCY 1 cut(s) 479
EcoO65I GGTNACC 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 3 cut(s) 337, 512, 536
FaiI YATR 4 cut(s) 287, 335, 510, 534
FaqI GGGAC 3 cut(s) 368, 476, 492
FatI CATG 3 cut(s) 333, 508, 532
FauI CCCGC 1 cut(s) 411
FblI GTMKAC 1 cut(s) 15
FokI GGATG 2 cut(s) 233, 395
FspBI CTAG 4 cut(s) 246, 582, 603, 632
GlaI GCGC 1 cut(s) 407
GsaI CCCAGC 1 cut(s) 578
GsuI CTGGAG 1 cut(s) 774
HapII CCGG 2 cut(s) 197, 218
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 408
Hin1II CATG 3 cut(s) 337, 512, 536
Hin6I GCGC 1 cut(s) 406
HinP1I GCGC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 48
HinfI GANTC 5 cut(s) 281, 598, 642, 749, 758
HpaII CCGG 2 cut(s) 197, 218
HphI GGTGA 2 cut(s) 392, 758
Hpy166II GTNNAC 5 cut(s) 16, 112, 131, 239, 296
Hpy188I TCNGA 5 cut(s) 377, 434, 524, 597, 613
Hpy188III TCNNGA 5 cut(s) 66, 218, 334, 582, 753
Hpy8I GTNNAC 5 cut(s) 16, 112, 131, 239, 296
HpyAV CCTTC 4 cut(s) 133, 276, 386, 418
HpyCH4III ACNGT 2 cut(s) 212, 696
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 2 cut(s) 131, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpySE526I ACGT 1 cut(s) 731
Hsp92II CATG 3 cut(s) 337, 512, 536
HspAI GCGC 1 cut(s) 406
Kpn2I TCCGGA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 330, 519, 535
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 5 cut(s) 210, 231, 400, 588, 738
LweI GCATC 1 cut(s) 587
MaeI CTAG 4 cut(s) 246, 582, 603, 632
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 5 cut(s) 82, 398, 699, 727, 746
MalI GATC 3 cut(s) 332, 521, 537
MboI GATC 3 cut(s) 330, 519, 535
MboII GAAGA 6 cut(s) 148, 314, 676, 687, 701, 733
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 4 cut(s) 274, 339, 469, 485
MlyI GAGTC 3 cut(s) 275, 743, 767
MmeI TCCRAC 1 cut(s) 719
MnlI CCTC 8 cut(s) 62, 92, 136, 389, 489, 508, 559, 628
MroI TCCGGA 1 cut(s) 217
MroXI GAANNNNTTC 1 cut(s) 428
MseI TTAA 1 cut(s) 444
MspCI CTTAAG 1 cut(s) 443
MspI CCGG 2 cut(s) 197, 218
Mva1269I GAATGC 1 cut(s) 37
MvnI CGCG 1 cut(s) 406
MwoI GCNNNNNNNGC 1 cut(s) 637
NdeII GATC 3 cut(s) 330, 519, 535
NlaIII CATG 3 cut(s) 337, 512, 536
NlaIV GGNNCC 1 cut(s) 480
NmuCI GTSAC 2 cut(s) 398, 746
PagI TCATGA 1 cut(s) 333
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 428
PfeI GAWTC 2 cut(s) 598, 642
PflMI CCANNNNNTGG 1 cut(s) 558
PleI GAGTC 3 cut(s) 275, 743, 766
PpsI GAGTC 3 cut(s) 275, 743, 766
PpuMI RGGWCCY 1 cut(s) 479
PshAI GACNNNNGTC 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 479
PspEI GGTNACC 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 574
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 479
PspPPI RGGWCCY 1 cut(s) 479
PsrI GAACNNNNNNTAC 2 cut(s) 684, 716
PstNI CAGNNNCTG 1 cut(s) 182
SaqAI TTAA 1 cut(s) 444
Sau3AI GATC 3 cut(s) 330, 519, 535
Sau96I GGNCC 1 cut(s) 479
SchI GAGTC 3 cut(s) 275, 743, 767
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 1 cut(s) 587
SinI GGWCC 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 443
SmoI CTYRAG 1 cut(s) 443
Sse9I AATT 4 cut(s) 274, 339, 469, 485
SsiI CCGC 4 cut(s) 35, 124, 160, 404
SspMI CTAG 4 cut(s) 246, 582, 603, 632
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 2 cut(s) 212, 696
TaiI ACGT 1 cut(s) 734
TaqI TCGA 1 cut(s) 538
TasI AATT 4 cut(s) 274, 339, 469, 485
TfiI GAWTC 2 cut(s) 598, 642
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 3 cut(s) 138, 701, 715
TseFI GTSAC 2 cut(s) 398, 746
Tsp45I GTSAC 2 cut(s) 398, 746
TspDTI ATGAA 3 cut(s) 44, 399, 437
TspRI CASTG 3 cut(s) 138, 701, 715
Van91I CCANNNNNTGG 1 cut(s) 558
Vha464I CTTAAG 1 cut(s) 443
VneI GTGCAC 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 3 cut(s) 274, 469, 485
XbaI TCTAGA 1 cut(s) 581
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 428
XspI CTAG 4 cut(s) 246, 582, 603, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.