Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000127.1

Orthogroup ID

OG0000619

Physical Location & Seq

Genomic Coordinates Reverse (-)

1244 .. 1786

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000127.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggggggtgcattgagaagttcgaaccagatggagggcctccaggatactctgaacttttgtgaattggaggatatccggtttacgggacctcggtttacctggaaaggctcgagaaatggcgaagaagtgaaaattaggttggatcagtttacgggtaatcagaattggaagagtatgtttcctgcgtcttcggtgaagcacttgaacccgtcgacgtcagaccatgtccttattatcctggaggttagggagttaaaacggcgtaggaagaagaaaaagaaaaagagattcaaatttgaggagttttggttgagggatgagacgtgtcgagaggtggttaaaagtggttgggagggtgccatgggatctgagcccttcttgcagttgtggaacagaactcataatacaaggaggctacttgaagagtggagctttgatcagtttgggtctttgactgcagagattgagttgaccagggcccaactagccgtgttttttgataattccccctcagcaccaccggatgggacaagggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1

Protein Analysis

180

Amino Acids

21.03

Weight (kDa)

9.39

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000619)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis	RchiOBHm_Chr3g0488921
rosa_multiflora	Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii	Rroxscaffold_6G00403950
rosa_rugosa	Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha	Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	221
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	215
AclWI	GGATC	2 cut(s)	153, 376
AcsI	RAATTY	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	218
AfiI	CCNNNNNNNGG	3 cut(s)	34, 85, 527
AflIII	ACRYGT	1 cut(s)	326
AgsI	TTSAA	3 cut(s)	208, 295, 425
AjiI	CACGTC	1 cut(s)	327
AjnI	CCWGG	4 cut(s)	42, 101, 240, 476
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
Alw26I	GTCTC	1 cut(s)	317
AlwI	GGATC	2 cut(s)	153, 376
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	37, 480
ApaI	GGGCCC	1 cut(s)	484
ApoI	RAATTY	1 cut(s)	296
AspS9I	GGNCC	4 cut(s)	37, 89, 480, 481
AsuHPI	GGTGA	1 cut(s)	208
AsuII	TTCGAA	1 cut(s)	23
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	378, 484
BbsI	GAAGAC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	514
BccI	CCATC	2 cut(s)	25, 521
BceAI	ACGGC	2 cut(s)	278, 476
BciT130I	CCWGG	4 cut(s)	44, 103, 242, 478
BciVI	GTATCC	1 cut(s)	40
BclI	TGATCA	1 cut(s)	439
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	488, 541
BfmI	CTRYAG	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	40
Bme1390I	CCNGG	4 cut(s)	44, 103, 242, 478
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	4 cut(s)	37, 89, 480, 481
BmiI	GGNNCC	3 cut(s)	90, 361, 482
BmrFI	CCNGG	4 cut(s)	44, 103, 242, 478
BoxI	GACNNNNGTC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	183
BpmI	CTGGAG	2 cut(s)	26, 263
Bpu10I	CCTNAGC	1 cut(s)	514
Bpu14I	TTCGAA	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	92, 363, 477
BsaWI	WCCGGW	2 cut(s)	78, 523
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 85, 527
BseBI	CCWGG	4 cut(s)	44, 103, 242, 478
BseDI	CCNNGG	3 cut(s)	92, 363, 477
BseGI	GGATG	2 cut(s)	325, 532
BseLI	CCNNNNNNNGG	3 cut(s)	34, 85, 527
BseMII	CTCAG	2 cut(s)	363, 528
BseRI	GAGGAG	1 cut(s)	317
BseSI	GKGCMC	1 cut(s)	484
BshFI	GGCC	2 cut(s)	39, 482
BshNI	GGYRCC	1 cut(s)	359
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	79, 524
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	34, 85, 527
BsmAI	GTCTC	1 cut(s)	317
BsmBI	CGTCTC	1 cut(s)	317
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	39, 482
BsoBI	CYCGRG	1 cut(s)	112
Bsp119I	TTCGAA	1 cut(s)	23
Bsp120I	GGGCCC	1 cut(s)	480
Bsp1286I	GDGCHC	2 cut(s)	378, 484
Bsp143I	GATC	3 cut(s)	145, 368, 439
Bsp19I	CCATGG	1 cut(s)	363
BspANI	GGCC	2 cut(s)	39, 482
BspCNI	CTCAG	2 cut(s)	364, 527
BspLI	GGNNCC	3 cut(s)	90, 361, 482
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	2 cut(s)	153, 376
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	92, 363, 477
BssMI	GATC	3 cut(s)	145, 368, 439
BssNI	GRCGYC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	4 cut(s)	44, 103, 242, 478
Bst6I	CTCTTC	2 cut(s)	167, 420
BstACI	GRCGYC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	23
BstDEI	CTNAG	2 cut(s)	372, 514
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	325, 532
BstKTI	GATC	3 cut(s)	148, 371, 442
BstMAI	GTCTC	1 cut(s)	317
BstMBI	GATC	3 cut(s)	145, 368, 439
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 488
BstNI	CCWGG	4 cut(s)	44, 103, 242, 478
BstPAI	GACNNNNGTC	1 cut(s)	536
BstSCI	CCNGG	4 cut(s)	42, 101, 240, 476
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	484
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuI	GTATCC	1 cut(s)	40
BsuRI	GGCC	2 cut(s)	39, 482
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	325, 532
Cfr13I	GGNCC	4 cut(s)	37, 89, 480, 481
CseI	GACGC	1 cut(s)	177
CviAII	CATG	2 cut(s)	227, 364
CviJI	RGCY	7 cut(s)	39, 111, 376, 418, 435, 482, 491
CviKI_1	RGCY	7 cut(s)	39, 111, 376, 418, 435, 482, 491
DdeI	CTNAG	2 cut(s)	372, 514
DpnI	GATC	3 cut(s)	147, 370, 441
DpnII	GATC	3 cut(s)	145, 368, 439
Eam1104I	CTCTTC	2 cut(s)	167, 420
EarI	CTCTTC	2 cut(s)	167, 420
Eco130I	CCWWGG	1 cut(s)	363
Eco24I	GRGCYC	2 cut(s)	378, 484
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	112
EcoO109I	RGGNCCY	3 cut(s)	37, 89, 480
EcoRII	CCWGG	4 cut(s)	42, 101, 240, 476
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	363
EcoT38I	GRGCYC	2 cut(s)	378, 484
ErhI	CCWWGG	1 cut(s)	363
Esp3I	CGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	230, 367
FaiI	YATR	4 cut(s)	179, 228, 365, 405
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	2 cut(s)	226, 363
FbaI	TGATCA	1 cut(s)	439
FblI	GTMKAC	1 cut(s)	215
FokI	GGATG	2 cut(s)	332, 539
FriOI	GRGCYC	2 cut(s)	378, 484
FspBI	CTAG	2 cut(s)	488, 541
GsuI	CTGGAG	2 cut(s)	26, 263
HaeIII	GGCC	2 cut(s)	39, 482
HapII	CCGG	2 cut(s)	79, 524
HgaI	GACGC	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	230, 367
HincII	GTYRAC	2 cut(s)	216, 474
HindII	GTYRAC	2 cut(s)	216, 474
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	2 cut(s)	79, 524
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	5 cut(s)	84, 99, 153, 216, 474
Hpy188I	TCNGA	4 cut(s)	54, 165, 223, 373
Hpy188III	TCNNGA	2 cut(s)	114, 332
Hpy8I	GTNNAC	5 cut(s)	84, 99, 153, 216, 474
Hpy99I	CGWCG	2 cut(s)	217, 220
HpyAV	CCTTC	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	218, 326
HpyCH4V	TGCA	3 cut(s)	11, 385, 461
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 488
HpyF3I	CTNAG	2 cut(s)	372, 514
HpySE526I	ACGT	2 cut(s)	218, 326
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	230, 367
Ksp22I	TGATCA	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	145, 368, 439
LmnI	GCTCC	1 cut(s)	432
MaeI	CTAG	2 cut(s)	488, 541
MaeII	ACGT	2 cut(s)	218, 326
MalI	GATC	3 cut(s)	147, 370, 441
MboI	GATC	3 cut(s)	145, 368, 439
MboII	GAAGA	6 cut(s)	137, 183, 184, 283, 286, 437
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	378, 484
MluCI	AATT	5 cut(s)	65, 135, 166, 296, 505
MmeI	TCCRAC	1 cut(s)	123
MseI	TTAA	2 cut(s)	257, 342
MspI	CCGG	2 cut(s)	79, 524
MspR9I	CCNGG	4 cut(s)	44, 103, 242, 478
MvaI	CCWGG	4 cut(s)	44, 103, 242, 478
MwoI	GCNNNNNNNGC	2 cut(s)	382, 488
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	3 cut(s)	145, 368, 439
NlaIII	CATG	2 cut(s)	230, 367
NlaIV	GGNNCC	3 cut(s)	90, 361, 482
NspV	TTCGAA	1 cut(s)	23
PaeR7I	CTCGAG	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	291
PflFI	GACNNNGTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	527
PfoI	TCCNGGA	2 cut(s)	42, 240
PpuMI	RGGWCCY	1 cut(s)	89
PshAI	GACNNNNGTC	1 cut(s)	536
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	4 cut(s)	42, 101, 240, 476
PspGI	CCWGG	4 cut(s)	42, 101, 240, 476
PspN4I	GGNNCC	3 cut(s)	90, 361, 482
PspOMI	GGGCCC	1 cut(s)	480
PspPI	GGNCC	4 cut(s)	37, 89, 480, 481
PspPPI	RGGWCCY	1 cut(s)	89
PsrI	GAACNNNNNNTAC	2 cut(s)	391, 423
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	368
PsyI	GACNNNGTC	1 cut(s)	227
SalI	GTCGAC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	257, 342
Sau3AI	GATC	3 cut(s)	145, 368, 439
Sau96I	GGNCC	4 cut(s)	37, 89, 480, 481
ScrFI	CCNGG	4 cut(s)	44, 103, 242, 478
SduI	GDGCHC	2 cut(s)	378, 484
SetI	ASST	8 cut(s)	94, 104, 143, 221, 249, 329, 339, 437
SfcI	CTRYAG	1 cut(s)	459
Sfr274I	CTCGAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	23
SgrDI	CGTCGACG	1 cut(s)	214
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	65, 135, 166, 296, 505
SspMI	CTAG	2 cut(s)	488, 541
StyD4I	CCNGG	4 cut(s)	42, 101, 240, 476
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	2 cut(s)	221, 329
TaqI	TCGA	4 cut(s)	23, 113, 215, 331
TasI	AATT	5 cut(s)	65, 135, 166, 296, 505
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	257, 342
Tru9I	TTAA	2 cut(s)	257, 342
Tth111I	GACNNNGTC	1 cut(s)	227
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	296
XhoI	CTCGAG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	2 cut(s)	488, 541
ZraI	GACGTC	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.