Rmu_sc0004744.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004744.1
OG0000619
Physical Location & Seq
Reverse (-)
27106 .. 28251
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004744.1_g000008.1.cds

Sequence Viewer

Length: 528 bp
atgtggaaggaagatgtcaacgtttctctgaagtcttttagtagaaatcacattgatgtcgtgatcagggagggggatggtgcatcttcatggatatttacggggatctatggtcacccaaagatggaagaacggcacttgacgtgggagttgcttaaggctctgggaaaagaggattttggtctgtgggttgttgggagagactttaatgaaatcctgtcatttctagagaaacataggggccctagaaggggtgaaaggcagatggatgggttcaaggaggctttgttggaatatggtttgaaggatttgcactttgtgggacctgaattcacatggaggggcaacagaaatggggtggagattaaggaacgacttgaccgctttgtggctaactccagctggtcgagaaggccaggagatggatatgcttccaccagtcattacagcataaatgaatcggcatttggtgcaggaagtcttagagacagaagtgttttgtgccctgaaaaagatgcatccatctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

175

Amino Acids

20.09

Weight (kDa)

6.6

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 422
AciI CCGC 1 cut(s) 382
AclI AACGTT 1 cut(s) 21
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 329
AcuI CTGAAG 1 cut(s) 50
AdeI CACNNNGTG 1 cut(s) 319
AfiI CCNNNNNNNGG 5 cut(s) 124, 250, 251, 388, 422
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 2 cut(s) 277, 304
AjiI CACGTC 1 cut(s) 144
AjnI CCWGG 1 cut(s) 415
AjuI GAANNNNNNNTTGG 2 cut(s) 450, 482
AluBI AGCT 1 cut(s) 402
AluI AGCT 1 cut(s) 402
Alw26I GTCTC 2 cut(s) 195, 480
AlwI GGATC 1 cut(s) 113
AoxI GGCC 2 cut(s) 241, 413
ApaI GGGCCC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 329
AspS9I GGNCC 3 cut(s) 241, 242, 323
AsuHPI GGTGA 2 cut(s) 107, 266
AvaII GGWCC 1 cut(s) 323
BaeGI GKGCMC 2 cut(s) 245, 506
BanII GRGCYC 1 cut(s) 245
BccI CCATC 5 cut(s) 71, 118, 259, 263, 416
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 417
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 195, 480
BfaI CTAG 3 cut(s) 227, 246, 526
BfrI CTTAAG 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 417
Bme18I GGWCC 1 cut(s) 323
BmgBI CACGTC 1 cut(s) 144
BmgT120I GGNCC 3 cut(s) 241, 242, 323
BmiI GGNNCC 3 cut(s) 242, 243, 324
BmrFI CCNGG 1 cut(s) 417
BmsI GCATC 2 cut(s) 92, 505
BpmI CTGGAG 1 cut(s) 382
BsaXI ACNNNNNCTCC 2 cut(s) 272, 302
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 250, 251, 388, 422
Bse1I ACTGG 1 cut(s) 438
BseBI CCWGG 1 cut(s) 417
BseGI GGATG 3 cut(s) 82, 274, 518
BseLI CCNNNNNNNGG 5 cut(s) 124, 250, 251, 388, 422
BseNI ACTGG 1 cut(s) 438
BseSI GKGCMC 2 cut(s) 245, 506
BsgI GTGCAG 1 cut(s) 492
BshFI GGCC 2 cut(s) 243, 415
BslFI GGGAC 1 cut(s) 336
BslI CCNNNNNNNGG 5 cut(s) 124, 250, 251, 388, 422
BsmAI GTCTC 2 cut(s) 195, 480
BsmFI GGGAC 1 cut(s) 336
BsnI GGCC 2 cut(s) 243, 415
Bsp120I GGGCCC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 245, 506
Bsp143I GATC 2 cut(s) 63, 105
BspACI CCGC 1 cut(s) 382
BspANI GGCC 2 cut(s) 243, 415
BspLI GGNNCC 3 cut(s) 242, 243, 324
BspPI GGATC 1 cut(s) 113
BspTI CTTAAG 1 cut(s) 155
BsrI ACTGG 1 cut(s) 438
BssMI GATC 2 cut(s) 63, 105
Bst2UI CCWGG 1 cut(s) 417
BstAFI CTTAAG 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 470
BstDEI CTNAG 1 cut(s) 482
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 3 cut(s) 82, 274, 518
BstKTI GATC 2 cut(s) 66, 108
BstMAI GTCTC 2 cut(s) 195, 480
BstMBI GATC 2 cut(s) 63, 105
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNI CCWGG 1 cut(s) 417
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 415
BstSLI GKGCMC 2 cut(s) 245, 506
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 2 cut(s) 243, 415
BtrI CACGTC 1 cut(s) 144
BtsCI GGATG 3 cut(s) 82, 274, 518
Cfr13I GGNCC 3 cut(s) 241, 242, 323
CviAII CATG 2 cut(s) 90, 336
CviJI RGCY 6 cut(s) 161, 243, 284, 392, 402, 415
CviKI_1 RGCY 6 cut(s) 161, 243, 284, 392, 402, 415
DdeI CTNAG 1 cut(s) 482
DpnI GATC 2 cut(s) 65, 107
DpnII GATC 2 cut(s) 63, 105
DraIII CACNNNGTG 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 245
Eco47I GGWCC 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 113
EcoO109I RGGNCCY 3 cut(s) 241, 242, 323
EcoO65I GGTNACC 1 cut(s) 113
EcoRI GAATTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 415
EcoT22I ATGCAT 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 2 cut(s) 93, 339
FaiI YATR 7 cut(s) 91, 111, 237, 297, 337, 429, 452
FaqI GGGAC 1 cut(s) 336
FatI CATG 2 cut(s) 89, 335
FbaI TGATCA 1 cut(s) 63
FokI GGATG 3 cut(s) 89, 281, 505
FriOI GRGCYC 1 cut(s) 245
FspBI CTAG 3 cut(s) 227, 246, 526
GsuI CTGGAG 1 cut(s) 382
HaeIII GGCC 2 cut(s) 243, 415
Hin1II CATG 2 cut(s) 93, 339
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 1 cut(s) 458
HphI GGTGA 2 cut(s) 107, 266
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 61, 227, 408
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 243, 298, 405
HpyCH4IV ACGT 2 cut(s) 21, 143
HpyCH4V TGCA 4 cut(s) 83, 313, 473, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 2 cut(s) 21, 143
Hsp92II CATG 2 cut(s) 93, 339
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 2 cut(s) 63, 105
LweI GCATC 2 cut(s) 92, 505
MaeI CTAG 3 cut(s) 227, 246, 526
MaeII ACGT 2 cut(s) 21, 143
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 65, 107
MboI GATC 2 cut(s) 63, 105
MboII GAAGA 3 cut(s) 23, 78, 140
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 245, 506
MluCI AATT 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 4 cut(s) 64, 166, 274, 333
Mph1103I ATGCAT 1 cut(s) 520
MseI TTAA 3 cut(s) 156, 207, 366
MslI CAYNNNNRTG 2 cut(s) 54, 88
MspA1I CMGCKG 1 cut(s) 402
MspCI CTTAAG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 417
MvaI CCWGG 1 cut(s) 417
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeII GATC 2 cut(s) 63, 105
NlaIII CATG 2 cut(s) 93, 339
NlaIV GGNNCC 3 cut(s) 242, 243, 324
NmuCI GTSAC 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 520
PfeI GAWTC 1 cut(s) 458
PflMI CCANNNNNTGG 1 cut(s) 422
PpuMI RGGWCCY 1 cut(s) 323
Psp1406I AACGTT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 415
PspEI GGTNACC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 415
PspN4I GGNNCC 3 cut(s) 242, 243, 324
PspOMI GGGCCC 1 cut(s) 241
PspPI GGNCC 3 cut(s) 241, 242, 323
PspPPI RGGWCCY 1 cut(s) 323
PsuI RGATCY 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 402
RseI CAYNNNNRTG 2 cut(s) 54, 88
SaqAI TTAA 3 cut(s) 156, 207, 366
Sau3AI GATC 2 cut(s) 63, 105
Sau96I GGNCC 3 cut(s) 241, 242, 323
ScrFI CCNGG 1 cut(s) 417
SduI GDGCHC 2 cut(s) 245, 506
SetI ASST 4 cut(s) 24, 146, 328, 404
SfaNI GCATC 2 cut(s) 92, 505
SinI GGWCC 1 cut(s) 323
SmiMI CAYNNNNRTG 2 cut(s) 54, 88
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 329
SsiI CCGC 1 cut(s) 382
SspMI CTAG 3 cut(s) 227, 246, 526
StyD4I CCNGG 1 cut(s) 415
TaiI ACGT 2 cut(s) 24, 146
TaqI TCGA 1 cut(s) 407
TasI AATT 1 cut(s) 329
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 3 cut(s) 156, 207, 366
Tru9I TTAA 3 cut(s) 156, 207, 366
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 3 cut(s) 78, 225, 471
Van91I CCANNNNNTGG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 323
XapI RAATTY 1 cut(s) 329
XbaI TCTAGA 1 cut(s) 226
XspI CTAG 3 cut(s) 227, 246, 526
Zsp2I ATGCAT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.