Rh5DG412800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000619
Physical Location & Seq
Forward (+)
65528029 .. 65528391
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG412800.1

Sequence Viewer

Length: 363 bp
ATGCATGATCTCAGTTTCGTTGGCCCTCTGTTTACTTGGAAAGGGAAGCGACACGATGAAGAGATAAAAGTCAGGCTTGATCTATTTCTGGCGACTCAAGATTGGTCTGACAAGTTTCCGGCCTCACGTGTTACACAGCTCAATCCATCCAAATCTGATCATCTGCCTTTACTAATTGAGATACGTACCTGCAGACCAAAAAAGAAAATGAAGAAACTTTTCTTTCAGTTTGAAGAGCAGTGGCTGCTTGATGATGTTTGTGTAGACATGGTAAATCAAGGCTGGGAGGGAATCTTTGCTGACGATCATTTCATGAATTTTTGTAATCGGGCTGATAATACTACGCGGGTTTTGCTAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

120

Amino Acids

14.22

Weight (kDa)

6.4

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 197
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 346
AciI CCGC 1 cut(s) 346
AcsI RAATTY 1 cut(s) 316
AcvI CACGTG 1 cut(s) 128
AfaI GTAC 1 cut(s) 187
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
AlwNI CAGNNNCTG 1 cut(s) 244
AoxI GGCC 2 cut(s) 22, 120
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 23
BbrPI CACGTG 1 cut(s) 128
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 154
BclI TGATCA 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 197
BisI GCNGC 1 cut(s) 245
BlsI GCNGC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 81
BsaAI YACGTR 2 cut(s) 128, 185
BseGI GGATG 1 cut(s) 146
BseMII CTCAG 1 cut(s) 25
BseXI GCAGC 1 cut(s) 231
BseYI CCCAGC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 24, 122
BsiSI CCGG 1 cut(s) 119
BsnI GGCC 2 cut(s) 24, 122
Bsp143I GATC 4 cut(s) 7, 79, 157, 304
BspACI CCGC 1 cut(s) 346
BspANI GGCC 2 cut(s) 24, 122
BspCNI CTCAG 1 cut(s) 24
BspFNI CGCG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 312
BspMAI CTGCAG 1 cut(s) 194
BspMI ACCTGC 1 cut(s) 197
BspQI GCTCTTC 1 cut(s) 228
BssMI GATC 4 cut(s) 7, 79, 157, 304
Bst6I CTCTTC 2 cut(s) 54, 228
BstAPI GCANNNNNTGC 1 cut(s) 244
BstBAI YACGTR 2 cut(s) 128, 185
BstDEI CTNAG 2 cut(s) 11, 356
BstF5I GGATG 1 cut(s) 146
BstFNI CGCG 1 cut(s) 346
BstKTI GATC 4 cut(s) 10, 82, 160, 307
BstMBI GATC 4 cut(s) 7, 79, 157, 304
BstMWI GCNNNNNNNGC 2 cut(s) 244, 352
BstSFI CTRYAG 1 cut(s) 190
BstSNI TACGTA 1 cut(s) 185
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 24, 122
BtsCI GGATG 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 1 cut(s) 245
BveI ACCTGC 1 cut(s) 197
CaiI CAGNNNCTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 186
CviAII CATG 3 cut(s) 5, 268, 313
CviJI RGCY 7 cut(s) 24, 76, 122, 139, 244, 282, 332
CviKI_1 RGCY 7 cut(s) 24, 76, 122, 139, 244, 282, 332
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 2 cut(s) 11, 356
DpnI GATC 4 cut(s) 9, 81, 159, 306
DpnII GATC 4 cut(s) 7, 79, 157, 304
Eam1104I CTCTTC 2 cut(s) 54, 228
EarI CTCTTC 2 cut(s) 54, 228
Eco105I TACGTA 1 cut(s) 185
Eco72I CACGTG 1 cut(s) 128
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 271, 316
FaiI YATR 3 cut(s) 6, 269, 314
FalI AAGNNNNNCTT 2 cut(s) 60, 92
FatI CATG 3 cut(s) 4, 267, 312
FauI CCCGC 1 cut(s) 339
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 245
FokI GGATG 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 245
GluI GCNGC 1 cut(s) 245
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 2 cut(s) 24, 122
HapII CCGG 1 cut(s) 119
Hin1II CATG 3 cut(s) 8, 271, 316
HinfI GANTC 2 cut(s) 94, 291
HpaII CCGG 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 33, 265
Hpy188I TCNGA 2 cut(s) 109, 157
Hpy188III TCNNGA 2 cut(s) 98, 313
Hpy8I GTNNAC 2 cut(s) 33, 265
HpyCH4IV ACGT 2 cut(s) 127, 184
HpyCH4V TGCA 2 cut(s) 4, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 352
HpyF3I CTNAG 2 cut(s) 11, 356
HpySE526I ACGT 2 cut(s) 127, 184
Hsp92II CATG 3 cut(s) 8, 271, 316
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 7, 79, 157, 304
LguI GCTCTTC 1 cut(s) 228
LpnPI CCDG 5 cut(s) 58, 74, 132, 202, 268
Lsp1109I GCAGC 1 cut(s) 231
MaeII ACGT 2 cut(s) 127, 184
MaeIII GTNAC 1 cut(s) 130
MalI GATC 4 cut(s) 9, 81, 159, 306
MboI GATC 4 cut(s) 7, 79, 157, 304
MboII GAAGA 3 cut(s) 71, 223, 245
MluCI AATT 2 cut(s) 174, 316
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 3 cut(s) 36, 133, 280
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 218
MspI CCGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 244, 352
NdeII GATC 4 cut(s) 7, 79, 157, 304
NlaIII CATG 3 cut(s) 8, 271, 316
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 312
PciSI GCTCTTC 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 291
PkrI GCNGC 1 cut(s) 246
PleI GAGTC 1 cut(s) 88
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 2 cut(s) 128, 185
PspCI CACGTG 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 23
PstI CTGCAG 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 244
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 228
SatI GCNGC 1 cut(s) 245
Sau3AI GATC 4 cut(s) 7, 79, 157, 304
Sau96I GGNCC 1 cut(s) 23
SchI GAGTC 1 cut(s) 88
SetI ASST 4 cut(s) 130, 141, 187, 191
SfcI CTRYAG 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SnaBI TACGTA 1 cut(s) 185
Sse9I AATT 2 cut(s) 174, 316
SsiI CCGC 1 cut(s) 346
TaiI ACGT 2 cut(s) 130, 187
TasI AATT 2 cut(s) 174, 316
TfiI GAWTC 1 cut(s) 291
TscAI CASTG 1 cut(s) 245
TseI GCWGC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 72, 224, 301, 329
TspRI CASTG 1 cut(s) 245
XapI RAATTY 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.