Rmu_sc0005813.1_g000011

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005813.1
OG0000619
Physical Location & Seq
Forward (+)
30854 .. 31331
478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005813.1_g000011.1.cds

Sequence Viewer

Length: 357 bp
atggaaggactagaggagatgaaagagttacaagagcaagttaggttggcagagctgttaggggtacaacatgtggagaggcacgataagtatttgggattgccggttgagataagttattcgaaagaggacgcttttgagtacttggctgagagttcaaaagcgcacttcgggttggcgttgatggccaacttttggtggggtgatgaggaggataaaaggaagattcactggctttcttgggatcaactttgtgctctgaaaagagagggagggatgggttttagggacatgcatgactttaacctagctttgttggccaaacaagggtggcggataatcacaaggctcgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

118

Amino Acids

13.91

Weight (kDa)

5.24

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 195
AciI CCGC 1 cut(s) 334
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 2 cut(s) 186, 318
AfaI GTAC 2 cut(s) 66, 143
AfiI CCNNNNNNNGG 2 cut(s) 195, 327
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 1 cut(s) 159
AluBI AGCT 2 cut(s) 55, 311
AluI AGCT 2 cut(s) 55, 311
Alw21I GWGCWC 1 cut(s) 259
AlwI GGATC 1 cut(s) 252
AoxI GGCC 2 cut(s) 186, 318
AspLEI GCGC 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 215
AsuII TTCGAA 1 cut(s) 122
BalI TGGCCA 2 cut(s) 188, 320
Bbv12I GWGCWC 1 cut(s) 259
BccI CCATC 2 cut(s) 178, 271
BfaI CTAG 2 cut(s) 11, 308
BmcAI AGTACT 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 122
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 327
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 236
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 195, 327
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 236
BseRI GAGGAG 2 cut(s) 29, 224
BshFI GGCC 2 cut(s) 188, 320
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 195, 327
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 188, 320
Bsp119I TTCGAA 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 1 cut(s) 334
BspANI GGCC 2 cut(s) 188, 320
BspCNI CTCAG 1 cut(s) 142
BspPI GGATC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 1 cut(s) 244
BstBI TTCGAA 1 cut(s) 122
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 282
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstMWI GCNNNNNNNGC 2 cut(s) 185, 317
BstNSI RCATGY 2 cut(s) 74, 295
BsuRI GGCC 2 cut(s) 188, 320
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 229
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 103
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 65, 142
CviAII CATG 3 cut(s) 71, 292, 296
CviJI RGCY 7 cut(s) 55, 149, 188, 235, 311, 320, 349
CviKI_1 RGCY 7 cut(s) 55, 149, 188, 235, 311, 320, 349
CviQI GTAC 2 cut(s) 65, 142
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 186, 318
EciI GGCGGA 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 297
FaeI CATG 3 cut(s) 74, 295, 299
FaiI YATR 3 cut(s) 72, 293, 297
FaqI GGGAC 1 cut(s) 302
FatI CATG 3 cut(s) 70, 291, 295
FokI GGATG 1 cut(s) 289
FspBI CTAG 2 cut(s) 11, 308
GlaI GCGC 1 cut(s) 165
HaeIII GGCC 2 cut(s) 188, 320
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 166
Hin1II CATG 3 cut(s) 74, 295, 299
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HinfI GANTC 1 cut(s) 226
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 317
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 3 cut(s) 74, 295, 299
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 1 cut(s) 244
LpnPI CCDG 2 cut(s) 117, 217
MaeI CTAG 2 cut(s) 11, 308
MaeIII GTNAC 1 cut(s) 27
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 2 cut(s) 188, 320
MluNI TGGCCA 2 cut(s) 188, 320
MnlI CCTC 7 cut(s) 7, 72, 121, 202, 205, 262, 266
Mox20I TGGCCA 2 cut(s) 188, 320
Mph1103I ATGCAT 1 cut(s) 297
MscI TGGCCA 2 cut(s) 188, 320
MseI TTAA 1 cut(s) 303
Msp20I TGGCCA 2 cut(s) 188, 320
MspI CCGG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 185, 317
NdeII GATC 1 cut(s) 244
NlaIII CATG 3 cut(s) 74, 295, 299
NsiI ATGCAT 1 cut(s) 297
NspI RCATGY 2 cut(s) 74, 295
NspV TTCGAA 1 cut(s) 122
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 1 cut(s) 226
PflMI CCANNNNNTGG 1 cut(s) 195
PscI ACATGT 1 cut(s) 70
RsaI GTAC 2 cut(s) 66, 143
RsaNI GTAC 2 cut(s) 65, 142
SaqAI TTAA 1 cut(s) 303
Sau3AI GATC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 143
SduI GDGCHC 1 cut(s) 259
SetI ASST 4 cut(s) 47, 57, 309, 313
SfuI TTCGAA 1 cut(s) 122
SsiI CCGC 1 cut(s) 334
SspMI CTAG 2 cut(s) 11, 308
TaqI TCGA 2 cut(s) 122, 351
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 35
TspRI CASTG 1 cut(s) 236
Van91I CCANNNNNTGG 1 cut(s) 195
XceI RCATGY 2 cut(s) 74, 295
XspI CTAG 2 cut(s) 11, 308
ZrmI AGTACT 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.