Rmu_sc0001043.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001043.1
OG0000619
Physical Location & Seq
Forward (+)
20043 .. 20633
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001043.1_g000006.1.cds

Sequence Viewer

Length: 591 bp
atgttctggttcgaagagctctggttacgtgatgaggagtgtggaaagatggtggagttggggtggagacatgtgatcggtgatgacccttgtatggtgatttctaacaagattaagaggactcgacatgttctcatggagtggagagaaaccaagtttgggtccctacgtaatgatatcacagctattagggagctgttagctttgttttatgatacatctctaccctctcatcttgatgaggtgcgattggaattagaagcgaagttgaatgatcttcttcagaatgaacaagatttttggaggcagcgggctaagatattttggttgactgatggtgatatgaacacacgtttttttcataagcgtgctagtaatcggaagaagaagaatagaattaaaggcatctttaacgaggatggtttatggtgtactgatgatggtgatattgagagtattgtattgaactactacacggctcttttcacttccttacagccacagggaatttgtgaggttgcgtctatgcttcctcgatgcatctcggatgaaatgaatgtcttacttgctagagtagtgtctgaagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

196

Amino Acids

23.15

Weight (kDa)

5.48

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 310
AcsI RAATTY 1 cut(s) 507
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 433
AfiI CCNNNNNNNGG 2 cut(s) 94, 159
AflIII ACRYGT 3 cut(s) 70, 127, 350
AgsI TTSAA 2 cut(s) 271, 466
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 4 cut(s) 19, 185, 196, 203
AluI AGCT 4 cut(s) 19, 185, 196, 203
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 162
AsuHPI GGTGA 4 cut(s) 92, 109, 350, 455
AsuII TTCGAA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 319
BccI CCATC 4 cut(s) 43, 329, 413, 434
BceAI ACGGC 1 cut(s) 492
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 372, 570
BisI GCNGC 1 cut(s) 308
BlsI GCNGC 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 162
BmiI GGNNCC 2 cut(s) 163, 164
BmsI GCATC 3 cut(s) 414, 527, 549
Bpu14I TTCGAA 1 cut(s) 12
BsaAI YACGTR 2 cut(s) 29, 170
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 159
BseGI GGATG 2 cut(s) 424, 553
BseLI CCNNNNNNNGG 2 cut(s) 94, 159
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 21
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 94, 159
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 12
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 75, 274
BspACI CCGC 1 cut(s) 310
BspLI GGNNCC 2 cut(s) 163, 164
BspQI GCTCTTC 1 cut(s) 9
BspT104I TTCGAA 1 cut(s) 12
BssMI GATC 2 cut(s) 75, 274
Bst6I CTCTTC 1 cut(s) 9
BstBAI YACGTR 2 cut(s) 29, 170
BstBI TTCGAA 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 312, 369
BstDEI CTNAG 1 cut(s) 315
BstF5I GGATG 2 cut(s) 424, 553
BstKTI GATC 2 cut(s) 78, 277
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 2 cut(s) 75, 274
BstNSI RCATGY 2 cut(s) 74, 131
BstSNI TACGTA 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 424, 553
Cac8I GCNNGC 2 cut(s) 312, 369
Cfr13I GGNCC 1 cut(s) 162
CseI GACGC 1 cut(s) 510
Csp6I GTAC 1 cut(s) 432
CviAII CATG 3 cut(s) 71, 128, 136
CviJI RGCY 7 cut(s) 19, 185, 196, 203, 314, 479, 499
CviKI_1 RGCY 7 cut(s) 19, 185, 196, 203, 314, 479, 499
CviQI GTAC 1 cut(s) 432
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 77, 276
DpnII GATC 2 cut(s) 75, 274
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 19
Eco105I TACGTA 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 178
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 162
EcoRV GATATC 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 3 cut(s) 74, 131, 139
FaqI GGGAC 1 cut(s) 148
FatI CATG 3 cut(s) 70, 127, 135
FauI CCCGC 1 cut(s) 303
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 2 cut(s) 431, 560
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 2 cut(s) 372, 570
GluI GCNGC 1 cut(s) 308
HgaI GACGC 1 cut(s) 510
Hin1II CATG 3 cut(s) 74, 131, 139
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 1 cut(s) 121
HphI GGTGA 4 cut(s) 92, 109, 350, 455
Hpy166II GTNNAC 2 cut(s) 330, 432
Hpy188I TCNGA 4 cut(s) 285, 381, 547, 583
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 330, 432
HpyCH4IV ACGT 3 cut(s) 28, 169, 352
HpyCH4V TGCA 1 cut(s) 540
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 3 cut(s) 28, 169, 352
Hsp92II CATG 3 cut(s) 74, 131, 139
KflI GGGWCCC 1 cut(s) 162
Kzo9I GATC 2 cut(s) 75, 274
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 2 cut(s) 7, 488
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 3 cut(s) 414, 527, 549
MaeI CTAG 2 cut(s) 372, 570
MaeII ACGT 3 cut(s) 28, 169, 352
MaeIII GTNAC 1 cut(s) 24
MalI GATC 2 cut(s) 77, 276
MboI GATC 2 cut(s) 75, 274
MboII GAAGA 6 cut(s) 26, 269, 272, 394, 397, 400
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 3 cut(s) 254, 396, 507
MlyI GAGTC 1 cut(s) 115
MnlI CCTC 8 cut(s) 28, 111, 235, 238, 297, 409, 508, 543
Mph1103I ATGCAT 1 cut(s) 542
MseI TTAA 3 cut(s) 114, 399, 411
MslI CAYNNNNRTG 2 cut(s) 237, 366
MspA1I CMGCKG 1 cut(s) 310
NdeII GATC 2 cut(s) 75, 274
NlaIII CATG 3 cut(s) 74, 131, 139
NlaIV GGNNCC 2 cut(s) 163, 164
NsiI ATGCAT 1 cut(s) 542
NspI RCATGY 2 cut(s) 74, 131
NspV TTCGAA 1 cut(s) 12
PciI ACATGT 2 cut(s) 70, 127
PciSI GCTCTTC 1 cut(s) 9
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 2 cut(s) 29, 170
PpuMI RGGWCCY 1 cut(s) 162
PscI ACATGT 2 cut(s) 70, 127
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 163, 164
PspPI GGNCC 1 cut(s) 162
PspPPI RGGWCCY 1 cut(s) 162
RsaI GTAC 1 cut(s) 433
RsaNI GTAC 1 cut(s) 432
RseI CAYNNNNRTG 2 cut(s) 237, 366
SacI GAGCTC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 114, 399, 411
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 2 cut(s) 75, 274
Sau96I GGNCC 1 cut(s) 162
SchI GAGTC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 21
SetI ASST 9 cut(s) 21, 31, 172, 187, 198, 205, 246, 355, 519
SfaNI GCATC 3 cut(s) 414, 527, 549
SfuI TTCGAA 1 cut(s) 12
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 2 cut(s) 237, 366
SnaBI TACGTA 1 cut(s) 170
Sse9I AATT 3 cut(s) 254, 396, 507
SsiI CCGC 1 cut(s) 310
SspMI CTAG 2 cut(s) 372, 570
SstI GAGCTC 1 cut(s) 21
TaiI ACGT 3 cut(s) 31, 172, 355
TaqI TCGA 3 cut(s) 12, 124, 535
TasI AATT 3 cut(s) 254, 396, 507
TatI WGTACW 1 cut(s) 431
Tru1I TTAA 3 cut(s) 114, 399, 411
Tru9I TTAA 3 cut(s) 114, 399, 411
TseI GCWGC 1 cut(s) 307
TspDTI ATGAA 5 cut(s) 303, 350, 359, 564, 569
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 1 cut(s) 507
XceI RCATGY 2 cut(s) 74, 131
XspI CTAG 2 cut(s) 372, 570
Zsp2I ATGCAT 1 cut(s) 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.