Rh5CG459900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000619
Physical Location & Seq
Forward (+)
64146338 .. 64161587
15250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG459900.1

Sequence Viewer

Length: 459 bp
ATGCTTGCTCTGAGTTCGATCTTAGGAAGGATGTGGACTGATTTGGGCTCCCAGAGTTTGGAGCATGATTGTAGTCTCCCATCATTGGGGGCGGAAAGTAAGATCAAGAAAACCGAGTTAACTTTGGAGGGGTCCTTAGATTTGGGGACAGCTGGCAGCCATCATGATGGTAATTCTGTATCTTTGGGGGATGGAGATGGGCTTTCTCTAACAGGGTCTGATCATGGGCTCCTAACTAAATCTCAAGAGACTGGGCTTGAGACAAGTGATTCTGCAAATGGGGCTGTGACAATTCACTCTGGGCCCTTTATTGCCCGACGTAGAGAGAAAGAGAAGTGCGCCGATCAGGTCTTCCACAAGCGGAAGGAGTTTCTAGGTCTTTTACTTTTCCACTTCTACCAGAAGCCTGTACTATTATTTATGTCTTCTTCGATGATGATTGGTTTAAATTCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

16.29

Weight (kDa)

5.94

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000619)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g29861 FvH4_3g26084 FvH4_3g32551 FvH4_4g08193 FvH4_4g12950 FvH4_6g29733
rosa_chinensis RchiOBHm_Chr3g0488921
rosa_multiflora Rmu_co8238041.1_g000001 Rmu_co8265215.1_g000001 Rmu_co8486357.1_g000002 Rmu_sc0000389.1_g000016 Rmu_sc0000580.1_g000123 Rmu_sc0000789.1_g000005 Rmu_sc0001043.1_g000006 Rmu_sc0001208.1_g000001 Rmu_sc0001323.1_g000011 Rmu_sc0001636.1_g000001 Rmu_sc0001911.1_g000023 Rmu_sc0001940.1_g000010 Rmu_sc0002531.1_g000047 Rmu_sc0002715.1_g000007 Rmu_sc0002833.1_g000024 Rmu_sc0003859.1_g000046 Rmu_sc0003894.1_g000008 Rmu_sc0004744.1_g000008 Rmu_sc0004924.1_g000016 Rmu_sc0004991.1_g000004 Rmu_sc0005149.1_g000010 Rmu_sc0005149.1_g000011 Rmu_sc0005489.1_g000007 Rmu_sc0005592.1_g000030 Rmu_sc0005813.1_g000010 Rmu_sc0005813.1_g000011 Rmu_sc0005861.1_g000009 Rmu_sc0005949.1_g000016 Rmu_sc0006824.1_g000021 Rmu_sc0007069.1_g000025 Rmu_sc0008002.1_g000008 Rmu_sc0008148.1_g000008 Rmu_sc0008280.1_g000001 Rmu_sc0008317.1_g000010 Rmu_sc0011615.1_g000002 Rmu_sc0013925.1_g000004 Rmu_sc0014130.1_g000003 Rmu_sc0014510.1_g000008 Rmu_sc0016640.1_g000001 Rmu_sc0018068.1_g000002 Rmu_sc0021371.1_g000006 Rmu_sc0028652.1_g000007 Rmu_sc0032187.1_g000002 Rmu_sc0034241.1_g000001 Rmu_ssc0000127.1_g000003
rosa_roxburghii Rroxscaffold_6G00403950
rosa_rugosa Rorug01G0081700 Rorug02G0544000 Rorug05G0089900 Rorug05G0284500 Rorug05G0452400 Rorug07G0003400 Rorug07G0003400 Rorug07G0129200 Rorug07G0210600
rosa_samantha Rh1AG193900 Rh1AG194000 Rh1DG063400 Rh1DG204700 Rh2AG364300 Rh3BG140200 Rh3CG366000 Rh4DG342600 Rh5AG347700 Rh5BG437300 Rh5CG459900 Rh5DG127400 Rh5DG412800 Rh6BG381500 Rh7CG520500 Rh7DG241900 Rh7DG336000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 2 cut(s) 92, 361
AcsI RAATTY 1 cut(s) 448
AfaI GTAC 1 cut(s) 411
AfiI CCNNNNNNNGG 3 cut(s) 58, 85, 86
AluBI AGCT 1 cut(s) 152
AluI AGCT 1 cut(s) 152
Alw26I GTCTC 3 cut(s) 80, 242, 254
AlwNI CAGNNNCTG 1 cut(s) 218
AoxI GGCC 1 cut(s) 302
ApaI GGGCCC 1 cut(s) 306
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 448
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 3 cut(s) 132, 302, 303
AvaII GGWCC 1 cut(s) 132
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 3 cut(s) 50, 231, 306
BbsI GAAGAC 2 cut(s) 343, 417
BbvI GCAGC 1 cut(s) 168
BccI CCATC 5 cut(s) 88, 161, 168, 185, 191
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 3 cut(s) 80, 242, 254
BfaI CTAG 1 cut(s) 374
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 132
BmgT120I GGNCC 3 cut(s) 132, 302, 303
BmiI GGNNCC 4 cut(s) 49, 133, 230, 304
BmrI ACTGGG 1 cut(s) 261
BmuI ACTGGG 1 cut(s) 261
BpiI GAAGAC 2 cut(s) 343, 417
BpuEI CTTGAG 2 cut(s) 228, 278
Bsc4I CCNNNNNNNGG 3 cut(s) 58, 85, 86
Bse1I ACTGG 1 cut(s) 256
BseGI GGATG 2 cut(s) 36, 196
BseLI CCNNNNNNNGG 3 cut(s) 58, 85, 86
BseNI ACTGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 168
BshFI GGCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 3 cut(s) 58, 85, 86
BsmAI GTCTC 3 cut(s) 80, 242, 254
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 304
Bsp120I GGGCCC 1 cut(s) 302
Bsp1286I GDGCHC 3 cut(s) 50, 231, 306
Bsp143I GATC 4 cut(s) 18, 102, 220, 343
BspACI CCGC 2 cut(s) 92, 361
BspANI GGCC 1 cut(s) 304
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 4 cut(s) 49, 133, 230, 304
BsrI ACTGG 1 cut(s) 256
BssMI GATC 4 cut(s) 18, 102, 220, 343
BstC8I GCNNGC 2 cut(s) 6, 154
BstDEI CTNAG 3 cut(s) 11, 22, 136
BstF5I GGATG 2 cut(s) 36, 196
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 4 cut(s) 21, 105, 223, 346
BstMAI GTCTC 3 cut(s) 80, 242, 254
BstMBI GATC 4 cut(s) 18, 102, 220, 343
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 168
BstV2I GAAGAC 2 cut(s) 343, 417
BstXI CCANNNNNNTGG 1 cut(s) 167
BsuRI GGCC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 36, 196
Cac8I GCNNGC 2 cut(s) 6, 154
CaiI CAGNNNCTG 1 cut(s) 218
CciI TCATGA 1 cut(s) 163
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 3 cut(s) 132, 302, 303
Csp6I GTAC 1 cut(s) 410
CviAII CATG 3 cut(s) 65, 164, 224
CviJI RGCY 9 cut(s) 48, 152, 159, 202, 229, 256, 284, 304, 406
CviKI_1 RGCY 9 cut(s) 48, 152, 159, 202, 229, 256, 284, 304, 406
CviQI GTAC 1 cut(s) 410
DdeI CTNAG 3 cut(s) 11, 22, 136
DpnI GATC 4 cut(s) 20, 104, 222, 345
DpnII GATC 4 cut(s) 18, 102, 220, 343
DraI TTTAAA 1 cut(s) 447
EciI GGCGGA 1 cut(s) 107
Eco24I GRGCYC 3 cut(s) 50, 231, 306
Eco47I GGWCC 1 cut(s) 132
EcoO109I RGGNCCY 2 cut(s) 132, 303
EcoT38I GRGCYC 3 cut(s) 50, 231, 306
FaeI CATG 3 cut(s) 68, 167, 227
FaiI YATR 4 cut(s) 66, 165, 225, 422
FaqI GGGAC 1 cut(s) 160
FatI CATG 3 cut(s) 64, 163, 223
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 2 cut(s) 43, 203
FriOI GRGCYC 3 cut(s) 50, 231, 306
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 340
GluI GCNGC 1 cut(s) 157
HaeIII GGCC 1 cut(s) 304
HhaI GCGC 1 cut(s) 341
Hin1II CATG 3 cut(s) 68, 167, 227
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 1 cut(s) 269
HpaI GTTAAC 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 36, 120
Hpy188I TCNGA 2 cut(s) 12, 220
Hpy188III TCNNGA 3 cut(s) 106, 164, 245
Hpy8I GTNNAC 2 cut(s) 36, 120
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 21, 358
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 3 cut(s) 11, 22, 136
HpySE526I ACGT 1 cut(s) 319
Hsp92II CATG 3 cut(s) 68, 167, 227
HspAI GCGC 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 120
Kzo9I GATC 4 cut(s) 18, 102, 220, 343
LmnI GCTCC 3 cut(s) 53, 61, 234
LpnPI CCDG 9 cut(s) 65, 138, 198, 237, 285, 332, 413, 420, 438
Lsp1109I GCAGC 1 cut(s) 168
MaeI CTAG 1 cut(s) 374
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 286
MalI GATC 4 cut(s) 20, 104, 222, 345
MboI GATC 4 cut(s) 18, 102, 220, 343
MboII GAAGA 3 cut(s) 343, 417, 420
MhlI GDGCHC 3 cut(s) 50, 231, 306
MluCI AATT 3 cut(s) 172, 291, 448
MnlI CCTC 1 cut(s) 121
MseI TTAA 2 cut(s) 119, 446
MslI CAYNNNNRTG 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 281
NdeII GATC 4 cut(s) 18, 102, 220, 343
NlaIII CATG 3 cut(s) 68, 167, 227
NlaIV GGNNCC 4 cut(s) 49, 133, 230, 304
NmuCI GTSAC 1 cut(s) 286
PagI TCATGA 1 cut(s) 163
PfeI GAWTC 1 cut(s) 269
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 132
PspN4I GGNNCC 4 cut(s) 49, 133, 230, 304
PspOMI GGGCCC 1 cut(s) 302
PspPI GGNCC 3 cut(s) 132, 302, 303
PspPPI RGGWCCY 1 cut(s) 132
PstNI CAGNNNCTG 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 411
RsaNI GTAC 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 119, 446
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 4 cut(s) 18, 102, 220, 343
Sau96I GGNCC 3 cut(s) 132, 302, 303
SduI GDGCHC 3 cut(s) 50, 231, 306
SetI ASST 4 cut(s) 154, 322, 351, 379
SinI GGWCC 1 cut(s) 132
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 2 cut(s) 243, 257
SmoI CTYRAG 2 cut(s) 243, 257
Sse9I AATT 3 cut(s) 172, 291, 448
SsiI CCGC 2 cut(s) 92, 361
SspMI CTAG 1 cut(s) 374
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 17, 431
TasI AATT 3 cut(s) 172, 291, 448
TatI WGTACW 1 cut(s) 409
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 119, 446
Tru9I TTAA 2 cut(s) 119, 446
TseFI GTSAC 1 cut(s) 286
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 286
Van91I CCANNNNNTGG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 132
XapI RAATTY 1 cut(s) 448
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.