Rh5AG515800

BRIGHT, ARID (A/T-rich interaction domain) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019957
Physical Location & Seq
Forward (+)
87572384 .. 87573586
1203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG515800.1

Sequence Viewer

Length: 393 bp
ATGGCAGTGAGCTTGCTCTTCCTGAACCTTCTAGAGTTGAGATTCGGGCAGGACACTAAGGGATGCTGCAGCAGTGCAGCTCGTGCCATGCAGGGTTGGCACTCTCAATGCCTTTTTGGAAATGGCGAGGAGAAGCATTTGAGTACTATGCCAAAAAGCGACAAGCAGCTCAAGAGCTCTGGTTTGTTAAAGCGGAAAAAGCTATCTCCTGGGGATTGTGCTGCCCAGATTACTGACATGAAAGCGACAAAGCCACGGTTAGATATGACGGTATTCGATATTGGACAGCCAGCAGATTGGGTGAAAATTAACGTGAAACGATTTAGCGACTGCTTTGAGGTATGTGCCCTAGTTCCTGGACTTCTGCATGAGGAGATCGAATTACGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ARID HSP20

Protein Analysis

130

Amino Acids

14.47

Weight (kDa)

8.56

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019957)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0274391
rosa_rugosa Rorug05G0089900
rosa_samantha Rh1BG080200 Rh3BG312000 Rh5AG515800 Rh6DG192500 Rh7DG366400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AfaI GTAC 1 cut(s) 145
AjnI CCWGG 2 cut(s) 208, 355
AluBI AGCT 5 cut(s) 12, 80, 169, 177, 202
AluI AGCT 5 cut(s) 12, 80, 169, 177, 202
Alw21I GWGCWC 1 cut(s) 179
ApeKI GCWGC 5 cut(s) 66, 69, 77, 166, 221
AsuHPI GGTGA 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 349
BanII GRGCYC 1 cut(s) 179
BauI CACGAG 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 179
BbvI GCAGC 5 cut(s) 53, 81, 89, 178, 208
BciT130I CCWGG 2 cut(s) 210, 357
BfaI CTAG 2 cut(s) 32, 350
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 5 cut(s) 67, 70, 78, 167, 222
BlsI GCNGC 5 cut(s) 68, 71, 79, 168, 223
BmcAI AGTACT 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 210, 357
BmrFI CCNGG 2 cut(s) 210, 357
BmsI GCATC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 209, 254
BseBI CCWGG 2 cut(s) 210, 357
BseDI CCNNGG 2 cut(s) 209, 254
BseGI GGATG 1 cut(s) 68
BseRI GAGGAG 2 cut(s) 143, 386
BseSI GKGCMC 1 cut(s) 349
BseXI GCAGC 5 cut(s) 53, 81, 89, 178, 208
BsgI GTGCAG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 179, 349
Bsp143I GATC 1 cut(s) 375
BspACI CCGC 1 cut(s) 193
BspMAI CTGCAG 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 23
BssECI CCNNGG 2 cut(s) 209, 254
BssMI GATC 1 cut(s) 375
BssSI CACGAG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 210, 357
Bst4CI ACNGT 2 cut(s) 258, 271
Bst6I CTCTTC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 14, 291
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 68
BstKTI GATC 1 cut(s) 378
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 3 cut(s) 83, 97, 199
BstNI CCWGG 2 cut(s) 210, 357
BstSCI CCNGG 2 cut(s) 208, 355
BstSFI CTRYAG 1 cut(s) 67
BstSLI GKGCMC 1 cut(s) 349
BstV1I GCAGC 5 cut(s) 53, 81, 89, 178, 208
BstXI CCANNNNNNTGG 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 254
BtsCI GGATG 1 cut(s) 68
BtsI GCAGTG 2 cut(s) 12, 79
BtsIMutI CAGTG 2 cut(s) 12, 79
Cac8I GCNNGC 2 cut(s) 14, 291
Csp6I GTAC 1 cut(s) 144
CviAII CATG 3 cut(s) 88, 238, 368
CviJI RGCY 7 cut(s) 12, 80, 169, 177, 202, 253, 289
CviKI_1 RGCY 7 cut(s) 12, 80, 169, 177, 202, 253, 289
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 177
EcoRII CCWGG 2 cut(s) 208, 355
EcoT38I GRGCYC 1 cut(s) 179
FaeI CATG 3 cut(s) 91, 241, 371
FaiI YATR 8 cut(s) 89, 149, 239, 266, 343, 369, 389, 391
FatI CATG 3 cut(s) 87, 237, 367
FauNDI CATATG 1 cut(s) 389
Fnu4HI GCNGC 5 cut(s) 67, 70, 78, 167, 222
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 1 cut(s) 179
Fsp4HI GCNGC 5 cut(s) 67, 70, 78, 167, 222
FspBI CTAG 2 cut(s) 32, 350
GluI GCNGC 5 cut(s) 67, 70, 78, 167, 222
Hin1II CATG 3 cut(s) 91, 241, 371
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 22, 32, 172
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 2 cut(s) 258, 271
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 69, 77, 91, 367
HpyF10VI GCNNNNNNNGC 3 cut(s) 83, 97, 199
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 312
Hsp92II CATG 3 cut(s) 91, 241, 371
Kzo9I GATC 1 cut(s) 375
LguI GCTCTTC 1 cut(s) 23
Lsp1109I GCAGC 5 cut(s) 53, 81, 89, 178, 208
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 32, 350
MaeII ACGT 1 cut(s) 312
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 1 cut(s) 10
MhlI GDGCHC 2 cut(s) 179, 349
MluCI AATT 2 cut(s) 306, 380
MnlI CCTC 3 cut(s) 121, 331, 364
MseI TTAA 2 cut(s) 188, 309
MspR9I CCNGG 2 cut(s) 210, 357
MvaI CCWGG 2 cut(s) 210, 357
MwoI GCNNNNNNNGC 3 cut(s) 83, 97, 199
NdeI CATATG 1 cut(s) 389
NdeII GATC 1 cut(s) 375
NlaIII CATG 3 cut(s) 91, 241, 371
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 42
PfoI TCCNGGA 1 cut(s) 355
PkrI GCNGC 5 cut(s) 68, 71, 79, 168, 223
Psp124BI GAGCTC 1 cut(s) 179
Psp6I CCWGG 2 cut(s) 208, 355
PspGI CCWGG 2 cut(s) 208, 355
PstI CTGCAG 1 cut(s) 71
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
SacI GAGCTC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 188, 309
SatI GCNGC 5 cut(s) 67, 70, 78, 167, 222
Sau3AI GATC 1 cut(s) 375
ScaI AGTACT 1 cut(s) 145
ScrFI CCNGG 2 cut(s) 210, 357
SduI GDGCHC 2 cut(s) 179, 349
SetI ASST 8 cut(s) 14, 30, 82, 171, 179, 204, 315, 342
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 2 cut(s) 306, 380
SsiI CCGC 1 cut(s) 193
SspMI CTAG 2 cut(s) 32, 350
SstI GAGCTC 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 208, 355
TaaI ACNGT 2 cut(s) 258, 271
TaiI ACGT 1 cut(s) 315
TaqI TCGA 2 cut(s) 276, 378
TasI AATT 2 cut(s) 306, 380
TatI WGTACW 1 cut(s) 143
TfiI GAWTC 1 cut(s) 42
Tru1I TTAA 2 cut(s) 188, 309
Tru9I TTAA 2 cut(s) 188, 309
TscAI CASTG 2 cut(s) 12, 79
TseI GCWGC 5 cut(s) 66, 69, 77, 166, 221
TspDTI ATGAA 1 cut(s) 254
TspRI CASTG 2 cut(s) 12, 79
XbaI TCTAGA 1 cut(s) 31
XspI CTAG 2 cut(s) 32, 350
ZrmI AGTACT 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.