RchiOBHm_Chr6g0280001

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030387
Physical Location & Seq
Forward (+)
43239564 .. 43243042
3479 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 621 bp
ATGGAAGACAATGCTCAGACAGTGCTGTTTGAGCGGTGCGGTGGCAAGTGGAAGAGGATTTTGAGGTTCTTGCAATCCGTGGAGCAATCATGCATATTACCACTGGAAGGTATCACACTGCTAATAAGCAATTCATCAGTCTACTCATGTGGTTCCAGCTTATGTGGTGTTCTTGGCCAAGGTCCTGAGACTAAACTATGTGTGACATTTACCCAGATTAGTTTTCCATCTCCAGCACATGTGGTCCAAATGTCAGCCTCCCACAACCATGCTGCTTTTGTTATGCAATCTGGAGAGGTTTTCACATGTGGGGACAATTCGTCATTTTGTTGTGGGCATAAAGATACAAACCGGCCAATATTTAGGCCTAGGCTCGTAGAGGCAATGAAGGGAATTCCTTGCAAGCAGGTTGTTGCAGGGCTTAATTTTACAGCTTTCCTTACAAGACAAGGCCATGTTTATACATGTGGGGCCAATACACATGGACAACTCGGTCATGGAGACACCACAGATAGCCCAACTCCCAAAATTATTGAATTTCTCAAGCAAATTGGCTCCATAATTCAGATTGCTGCTGGTCCAAGTTACGTCTTAGCTGCAAACCAACTGAAATTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

206

Amino Acids

22.27

Weight (kDa)

8.35

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 41 - 200 4.9e-30 RCC1-like domain
RCC1_2 PF13540 81 - 108 6.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 97 - 147 3.6e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 135 - 163 3.9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 150 - 199 2e-13 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0030387)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0280001
rosa_samantha Rh6DG235400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
Acc36I ACCTGC 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 141
AciI CCGC 2 cut(s) 34, 39
AcoI YGGCCR 2 cut(s) 175, 353
AcsI RAATTY 3 cut(s) 393, 536, 611
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 3 cut(s) 238, 305, 464
AgsI TTSAA 1 cut(s) 536
AhdI GACNNNNNGTC 1 cut(s) 319
AluBI AGCT 3 cut(s) 159, 434, 596
AluI AGCT 3 cut(s) 159, 434, 596
Alw26I GTCTC 2 cut(s) 182, 495
AoxI GGCC 5 cut(s) 175, 353, 365, 451, 471
ApeKI GCWGC 3 cut(s) 272, 572, 596
ApoI RAATTY 3 cut(s) 393, 536, 611
AspA2I CCTAGG 1 cut(s) 368
AspS9I GGNCC 4 cut(s) 182, 244, 471, 578
AvaII GGWCC 3 cut(s) 182, 244, 578
AvrII CCTAGG 1 cut(s) 368
BalI TGGCCA 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 259, 559, 583
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 182, 495
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 397
BisI GCNGC 3 cut(s) 273, 573, 597
BlnI CCTAGG 1 cut(s) 368
BlsI GCNGC 3 cut(s) 274, 574, 598
Bme18I GGWCC 3 cut(s) 182, 244, 578
BmeRI GACNNNNNGTC 1 cut(s) 319
BmgT120I GGNCC 4 cut(s) 182, 244, 471, 578
BmiI GGNNCC 3 cut(s) 154, 472, 556
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 2 cut(s) 216, 312
BpuEI CTTGAG 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 78, 178, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 390
BseDI CCNNGG 3 cut(s) 78, 178, 368
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 29, 177
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 259, 559, 583
BshFI GGCC 5 cut(s) 177, 355, 367, 453, 473
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 182, 495
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 5 cut(s) 177, 355, 367, 453, 473
BspACI CCGC 2 cut(s) 34, 39
BspANI GGCC 5 cut(s) 177, 355, 367, 453, 473
BspCNI CTCAG 2 cut(s) 28, 178
BspLI GGNNCC 3 cut(s) 154, 472, 556
BspMI ACCTGC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 3 cut(s) 78, 178, 368
BssT1I CCWWGG 2 cut(s) 178, 368
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 15, 186, 592
BstDSI CCRYGG 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 182, 495
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 3 cut(s) 242, 309, 468
BstV1I GCAGC 3 cut(s) 259, 559, 583
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 5 cut(s) 177, 355, 367, 453, 473
BtgI CCRYGG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 3 cut(s) 27, 101, 116
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 4 cut(s) 182, 244, 471, 578
CviAII CATG 9 cut(s) 90, 147, 239, 269, 306, 455, 465, 482, 497
DdeI CTNAG 3 cut(s) 15, 186, 592
DrdI GACNNNNNNGTC 1 cut(s) 492
DriI GACNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 492
EaeI YGGCCR 2 cut(s) 175, 353
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 178, 368
Eco147I AGGCCT 1 cut(s) 367
Eco47I GGWCC 3 cut(s) 182, 244, 578
EcoO109I RGGNCCY 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 393
EcoT14I CCWWGG 2 cut(s) 178, 368
EcoT22I ATGCAT 1 cut(s) 95
ErhI CCWWGG 2 cut(s) 178, 368
FaeI CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
FaqI GGGAC 1 cut(s) 326
FatI CATG 9 cut(s) 89, 146, 238, 268, 305, 454, 464, 481, 496
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 273, 573, 597
Fsp4HI GCNGC 3 cut(s) 273, 573, 597
FspBI CTAG 1 cut(s) 369
GluI GCNGC 3 cut(s) 273, 573, 597
GsuI CTGGAG 2 cut(s) 216, 312
HaeIII GGCC 5 cut(s) 177, 355, 367, 453, 473
HapII CCGG 1 cut(s) 352
Hin1II CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
HpaII CCGG 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 18, 567
Hpy188III TCNNGA 2 cut(s) 185, 291
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 101, 382
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 6 cut(s) 73, 93, 286, 402, 416, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 3 cut(s) 15, 186, 592
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
LmnI GCTCC 2 cut(s) 82, 560
Lsp1109I GCAGC 3 cut(s) 259, 559, 583
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 202, 584
MbiI CCGCTC 1 cut(s) 34
MboII GAAGA 2 cut(s) 17, 64
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 9 cut(s) 130, 316, 393, 424, 528, 536, 549, 561, 611
MluNI TGGCCA 1 cut(s) 177
MnlI CCTC 5 cut(s) 48, 57, 268, 289, 373
Mox20I TGGCCA 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 95
MscI TGGCCA 1 cut(s) 177
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 31
NlaIII CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
NlaIV GGNNCC 3 cut(s) 154, 472, 556
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 95
NspI RCATGY 3 cut(s) 242, 309, 468
PceI AGGCCT 1 cut(s) 367
PciI ACATGT 3 cut(s) 238, 305, 464
PkrI GCNGC 3 cut(s) 274, 574, 598
PpuMI RGGWCCY 1 cut(s) 182
PscI ACATGT 3 cut(s) 238, 305, 464
Psp5II RGGWCCY 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 154, 472, 556
PspPI GGNCC 4 cut(s) 182, 244, 471, 578
PspPPI RGGWCCY 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 273, 573, 597
Sau96I GGNCC 4 cut(s) 182, 244, 471, 578
SetI ASST 9 cut(s) 68, 112, 161, 184, 300, 411, 436, 591, 598
SinI GGWCC 3 cut(s) 182, 244, 578
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 9 cut(s) 130, 316, 393, 424, 528, 536, 549, 561, 611
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 2 cut(s) 34, 39
SspI AATATT 1 cut(s) 360
SspMI CTAG 1 cut(s) 369
StuI AGGCCT 1 cut(s) 367
StyI CCWWGG 2 cut(s) 178, 368
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 591
TaqII GACCGA 1 cut(s) 482
TasI AATT 9 cut(s) 130, 316, 393, 424, 528, 536, 549, 561, 611
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 3 cut(s) 27, 108, 123
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 272, 572, 596
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 123, 401
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 3 cut(s) 27, 108, 123
VpaK11BI GGWCC 3 cut(s) 182, 244, 578
XapI RAATTY 3 cut(s) 393, 536, 611
XceI RCATGY 3 cut(s) 242, 309, 468
XmaJI CCTAGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.