RchiOBHm_Chr6g0280001

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030387
Physical Location & Seq
Forward (+)
43239564 .. 43243042
3479 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25109

Sequence Viewer

Length: 621 bp
ATGGAAGACAATGCTCAGACAGTGCTGTTTGAGCGGTGCGGTGGCAAGTGGAAGAGGATTTTGAGGTTCTTGCAATCCGTGGAGCAATCATGCATATTACCACTGGAAGGTATCACACTGCTAATAAGCAATTCATCAGTCTACTCATGTGGTTCCAGCTTATGTGGTGTTCTTGGCCAAGGTCCTGAGACTAAACTATGTGTGACATTTACCCAGATTAGTTTTCCATCTCCAGCACATGTGGTCCAAATGTCAGCCTCCCACAACCATGCTGCTTTTGTTATGCAATCTGGAGAGGTTTTCACATGTGGGGACAATTCGTCATTTTGTTGTGGGCATAAAGATACAAACCGGCCAATATTTAGGCCTAGGCTCGTAGAGGCAATGAAGGGAATTCCTTGCAAGCAGGTTGTTGCAGGGCTTAATTTTACAGCTTTCCTTACAAGACAAGGCCATGTTTATACATGTGGGGCCAATACACATGGACAACTCGGTCATGGAGACACCACAGATAGCCCAACTCCCAAAATTATTGAATTTCTCAAGCAAATTGGCTCCATAATTCAGATTGCTGCTGGTCCAAGTTACGTCTTAGCTGCAAACCAACTGAAATTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

206

Amino Acids

22.27

Weight (kDa)

8.35

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 41 - 200 4.9e-30 RCC1-like domain
RCC1_2 PF13540 81 - 108 6.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 97 - 147 3.6e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 135 - 163 3.9e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 150 - 199 2e-13 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030387)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0280001
rosa_samantha Rh6DG235400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 492
Acc36I ACCTGC 1 cut(s) 397
AccBSI CCGCTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 141
AciI CCGC 2 cut(s) 34, 39
AcoI YGGCCR 2 cut(s) 175, 353
AcsI RAATTY 3 cut(s) 393, 536, 611
AfiI CCNNNNNNNGG 1 cut(s) 107
AflIII ACRYGT 3 cut(s) 238, 305, 464
AgsI TTSAA 1 cut(s) 536
AhdI GACNNNNNGTC 1 cut(s) 319
AluBI AGCT 3 cut(s) 159, 434, 596
AluI AGCT 3 cut(s) 159, 434, 596
Alw26I GTCTC 2 cut(s) 182, 495
AoxI GGCC 5 cut(s) 175, 353, 365, 451, 471
ApeKI GCWGC 3 cut(s) 272, 572, 596
ApoI RAATTY 3 cut(s) 393, 536, 611
AspA2I CCTAGG 1 cut(s) 368
AspS9I GGNCC 4 cut(s) 182, 244, 471, 578
AvaII GGWCC 3 cut(s) 182, 244, 578
AvrII CCTAGG 1 cut(s) 368
BalI TGGCCA 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 259, 559, 583
BccI CCATC 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 182, 495
BfaI CTAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 397
BisI GCNGC 3 cut(s) 273, 573, 597
BlnI CCTAGG 1 cut(s) 368
BlsI GCNGC 3 cut(s) 274, 574, 598
Bme18I GGWCC 3 cut(s) 182, 244, 578
BmeRI GACNNNNNGTC 1 cut(s) 319
BmgT120I GGNCC 4 cut(s) 182, 244, 471, 578
BmiI GGNNCC 3 cut(s) 154, 472, 556
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 2 cut(s) 216, 312
BpuEI CTTGAG 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 78, 178, 368
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 390
BseDI CCNNGG 3 cut(s) 78, 178, 368
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 29, 177
BseNI ACTGG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 259, 559, 583
BshFI GGCC 5 cut(s) 177, 355, 367, 453, 473
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 2 cut(s) 182, 495
BsmFI GGGAC 1 cut(s) 326
BsnI GGCC 5 cut(s) 177, 355, 367, 453, 473
BspACI CCGC 2 cut(s) 34, 39
BspANI GGCC 5 cut(s) 177, 355, 367, 453, 473
BspCNI CTCAG 2 cut(s) 28, 178
BspLI GGNNCC 3 cut(s) 154, 472, 556
BspMI ACCTGC 1 cut(s) 397
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 351
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 351
BssECI CCNNGG 3 cut(s) 78, 178, 368
BssT1I CCWWGG 2 cut(s) 178, 368
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 404
BstDEI CTNAG 3 cut(s) 15, 186, 592
BstDSI CCRYGG 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 182, 495
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 3 cut(s) 242, 309, 468
BstV1I GCAGC 3 cut(s) 259, 559, 583
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 5 cut(s) 177, 355, 367, 453, 473
BtgI CCRYGG 1 cut(s) 78
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 3 cut(s) 27, 101, 116
BveI ACCTGC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 404
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 4 cut(s) 182, 244, 471, 578
CviAII CATG 9 cut(s) 90, 147, 239, 269, 306, 455, 465, 482, 497
DdeI CTNAG 3 cut(s) 15, 186, 592
DrdI GACNNNNNNGTC 1 cut(s) 492
DriI GACNNNNNGTC 1 cut(s) 319
DseDI GACNNNNNNGTC 1 cut(s) 492
EaeI YGGCCR 2 cut(s) 175, 353
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 319
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 178, 368
Eco147I AGGCCT 1 cut(s) 367
Eco47I GGWCC 3 cut(s) 182, 244, 578
EcoO109I RGGNCCY 1 cut(s) 182
EcoRI GAATTC 1 cut(s) 393
EcoT14I CCWWGG 2 cut(s) 178, 368
EcoT22I ATGCAT 1 cut(s) 95
ErhI CCWWGG 2 cut(s) 178, 368
FaeI CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
FaqI GGGAC 1 cut(s) 326
FatI CATG 9 cut(s) 89, 146, 238, 268, 305, 454, 464, 481, 496
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 273, 573, 597
Fsp4HI GCNGC 3 cut(s) 273, 573, 597
FspBI CTAG 1 cut(s) 369
GluI GCNGC 3 cut(s) 273, 573, 597
GsuI CTGGAG 2 cut(s) 216, 312
HaeIII GGCC 5 cut(s) 177, 355, 367, 453, 473
HapII CCGG 1 cut(s) 352
Hin1II CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
HpaII CCGG 1 cut(s) 352
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 18, 567
Hpy188III TCNNGA 2 cut(s) 185, 291
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 2 cut(s) 101, 382
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 6 cut(s) 73, 93, 286, 402, 416, 599
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 3 cut(s) 15, 186, 592
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
LmnI GCTCC 2 cut(s) 82, 560
Lsp1109I GCAGC 3 cut(s) 259, 559, 583
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 202, 584
MbiI CCGCTC 1 cut(s) 34
MboII GAAGA 2 cut(s) 17, 64
MlsI TGGCCA 1 cut(s) 177
MluCI AATT 9 cut(s) 130, 316, 393, 424, 528, 536, 549, 561, 611
MluNI TGGCCA 1 cut(s) 177
MnlI CCTC 5 cut(s) 48, 57, 268, 289, 373
Mox20I TGGCCA 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 95
MscI TGGCCA 1 cut(s) 177
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 177
MspI CCGG 1 cut(s) 352
MwoI GCNNNNNNNGC 1 cut(s) 31
NlaIII CATG 9 cut(s) 93, 150, 242, 272, 309, 458, 468, 485, 500
NlaIV GGNNCC 3 cut(s) 154, 472, 556
NmuCI GTSAC 1 cut(s) 202
NsiI ATGCAT 1 cut(s) 95
NspI RCATGY 3 cut(s) 242, 309, 468
PceI AGGCCT 1 cut(s) 367
PciI ACATGT 3 cut(s) 238, 305, 464
PkrI GCNGC 3 cut(s) 274, 574, 598
PpuMI RGGWCCY 1 cut(s) 182
PscI ACATGT 3 cut(s) 238, 305, 464
Psp5II RGGWCCY 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 154, 472, 556
PspPI GGNCC 4 cut(s) 182, 244, 471, 578
PspPPI RGGWCCY 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 273, 573, 597
Sau96I GGNCC 4 cut(s) 182, 244, 471, 578
SetI ASST 9 cut(s) 68, 112, 161, 184, 300, 411, 436, 591, 598
SinI GGWCC 3 cut(s) 182, 244, 578
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 9 cut(s) 130, 316, 393, 424, 528, 536, 549, 561, 611
SseBI AGGCCT 1 cut(s) 367
SsiI CCGC 2 cut(s) 34, 39
SspI AATATT 1 cut(s) 360
SspMI CTAG 1 cut(s) 369
StuI AGGCCT 1 cut(s) 367
StyI CCWWGG 2 cut(s) 178, 368
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 591
TaqII GACCGA 1 cut(s) 482
TasI AATT 9 cut(s) 130, 316, 393, 424, 528, 536, 549, 561, 611
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 3 cut(s) 27, 108, 123
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 3 cut(s) 272, 572, 596
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 123, 401
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 3 cut(s) 27, 108, 123
VpaK11BI GGWCC 3 cut(s) 182, 244, 578
XapI RAATTY 3 cut(s) 393, 536, 611
XceI RCATGY 3 cut(s) 242, 309, 468
XmaJI CCTAGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.