Rh6DG235400

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0030387
Physical Location & Seq
Forward (+)
41981100 .. 41983366
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG235400.1

Sequence Viewer

Length: 540 bp
ATGGAAGACAATGCTCAGACAGTGCTGTTTGAGCGGTGCGGTGGCAAGTGGAAGAGGATTTTGAGGTTCTTGCAATCCGTGGAGCAATCGTCTGACATGGTGGAGACTTCAGCAGGCAATATGCATATTACCACTGGAAGTTTTCCATCTCCAGCACATGTGGTCCAAATGTCAGCCTCCCACAACCATGCTGCTTTTGTTATGCAATCTGGAGAGGTTTTCACATGTGGGGACAATTCGTCATTTTGTTGTGGGCATAAAGATACAAACCGGCCAATATTTAGGCCTAGGCTCGTAGAGGCAATGAAGGGAATTCCTTGCAAGCAGGTTGTTGCAGGGCTTAATTTTACAGCTTTCCTTACAAGACAAGGCCATGTTTATACATGTGGGGCCAATACACATGGACAACTCGGTCATGGAGACACCACAGATAGCCCAACTCCCAAAATTATTGAATTTCTCAAGCAAATTGGCTCCATAATTCAGATTGCTGCTGGTCCAAGTTACGTCTTAGCTGCAAACCAACTGAAATTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

179

Amino Acids

19.47

Weight (kDa)

8.26

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 43 - 173 4.7e-26 RCC1-like domain
RCC1_2 PF13540 54 - 81 5.8e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 70 - 120 2.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 108 - 136 3.2e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 123 - 172 1.5e-13 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030387)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0280001
rosa_samantha Rh6DG235400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 411
Acc36I ACCTGC 1 cut(s) 316
AccBSI CCGCTC 1 cut(s) 34
AciI CCGC 2 cut(s) 34, 39
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 3 cut(s) 312, 455, 530
AcuI CTGAAG 1 cut(s) 93
AflIII ACRYGT 3 cut(s) 157, 224, 383
AgsI TTSAA 1 cut(s) 455
AhdI GACNNNNNGTC 1 cut(s) 238
AluBI AGCT 2 cut(s) 353, 515
AluI AGCT 2 cut(s) 353, 515
Alw26I GTCTC 2 cut(s) 98, 414
AoxI GGCC 4 cut(s) 272, 284, 370, 390
ApeKI GCWGC 3 cut(s) 191, 491, 515
ApoI RAATTY 3 cut(s) 312, 455, 530
AspA2I CCTAGG 1 cut(s) 287
AspS9I GGNCC 3 cut(s) 163, 390, 497
AvaII GGWCC 2 cut(s) 163, 497
AvrII CCTAGG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 3 cut(s) 178, 478, 502
BccI CCATC 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 98, 414
BfaI CTAG 1 cut(s) 288
BfuAI ACCTGC 1 cut(s) 316
BisI GCNGC 3 cut(s) 192, 492, 516
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 3 cut(s) 193, 493, 517
Bme18I GGWCC 2 cut(s) 163, 497
BmeRI GACNNNNNGTC 1 cut(s) 238
BmgT120I GGNCC 3 cut(s) 163, 390, 497
BmiI GGNNCC 2 cut(s) 391, 475
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 2 cut(s) 135, 231
BpuEI CTTGAG 1 cut(s) 446
BsaJI CCNNGG 2 cut(s) 78, 287
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 78, 287
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 29
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 3 cut(s) 178, 478, 502
BshFI GGCC 4 cut(s) 274, 286, 372, 392
BsiSI CCGG 1 cut(s) 271
BslFI GGGAC 1 cut(s) 245
BsmAI GTCTC 2 cut(s) 98, 414
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 4 cut(s) 274, 286, 372, 392
BspACI CCGC 2 cut(s) 34, 39
BspANI GGCC 4 cut(s) 274, 286, 372, 392
BspCNI CTCAG 1 cut(s) 28
BspLI GGNNCC 2 cut(s) 391, 475
BspMI ACCTGC 1 cut(s) 316
BsrBI CCGCTC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 78, 287
BssT1I CCWWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 115, 323
BstDEI CTNAG 2 cut(s) 15, 511
BstDSI CCRYGG 1 cut(s) 78
BstMAI GTCTC 2 cut(s) 98, 414
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNSI RCATGY 3 cut(s) 161, 228, 387
BstV1I GCAGC 3 cut(s) 178, 478, 502
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 4 cut(s) 274, 286, 372, 392
BtgI CCRYGG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 27, 132
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 115, 323
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 3 cut(s) 163, 390, 497
CviAII CATG 8 cut(s) 97, 158, 188, 225, 374, 384, 401, 416
DdeI CTNAG 2 cut(s) 15, 511
DrdI GACNNNNNNGTC 1 cut(s) 411
DriI GACNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 287
Eco147I AGGCCT 1 cut(s) 286
Eco47I GGWCC 2 cut(s) 163, 497
Eco57I CTGAAG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 312
EcoT14I CCWWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 8 cut(s) 100, 161, 191, 228, 377, 387, 404, 419
FaqI GGGAC 1 cut(s) 245
FatI CATG 8 cut(s) 96, 157, 187, 224, 373, 383, 400, 415
Fnu4HI GCNGC 3 cut(s) 192, 492, 516
Fsp4HI GCNGC 3 cut(s) 192, 492, 516
FspBI CTAG 1 cut(s) 288
GluI GCNGC 3 cut(s) 192, 492, 516
GsuI CTGGAG 2 cut(s) 135, 231
HaeIII GGCC 4 cut(s) 274, 286, 372, 392
HapII CCGG 1 cut(s) 271
Hin1II CATG 8 cut(s) 100, 161, 191, 228, 377, 387, 404, 419
HpaII CCGG 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 18, 94, 486
Hpy188III TCNNGA 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 6 cut(s) 73, 124, 205, 321, 335, 518
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 15, 511
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 8 cut(s) 100, 161, 191, 228, 377, 387, 404, 419
LmnI GCTCC 2 cut(s) 82, 479
LpnPI CCDG 8 cut(s) 99, 120, 165, 195, 284, 311, 321, 480
Lsp1109I GCAGC 3 cut(s) 178, 478, 502
MaeI CTAG 1 cut(s) 288
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 503
MbiI CCGCTC 1 cut(s) 34
MboII GAAGA 2 cut(s) 17, 64
MluCI AATT 8 cut(s) 235, 312, 343, 447, 455, 468, 480, 530
MnlI CCTC 5 cut(s) 48, 57, 187, 208, 292
Mph1103I ATGCAT 1 cut(s) 126
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 31
NlaIII CATG 8 cut(s) 100, 161, 191, 228, 377, 387, 404, 419
NlaIV GGNNCC 2 cut(s) 391, 475
NsiI ATGCAT 1 cut(s) 126
NspI RCATGY 3 cut(s) 161, 228, 387
PceI AGGCCT 1 cut(s) 286
PciI ACATGT 3 cut(s) 157, 224, 383
PkrI GCNGC 3 cut(s) 193, 493, 517
PscI ACATGT 3 cut(s) 157, 224, 383
PspN4I GGNNCC 2 cut(s) 391, 475
PspPI GGNCC 3 cut(s) 163, 390, 497
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 192, 492, 516
Sau96I GGNCC 3 cut(s) 163, 390, 497
SetI ASST 6 cut(s) 68, 219, 330, 355, 510, 517
SinI GGWCC 2 cut(s) 163, 497
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 8 cut(s) 235, 312, 343, 447, 455, 468, 480, 530
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 2 cut(s) 34, 39
SspI AATATT 1 cut(s) 279
SspMI CTAG 1 cut(s) 288
StuI AGGCCT 1 cut(s) 286
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 22
TaiI ACGT 1 cut(s) 510
TaqII GACCGA 1 cut(s) 401
TasI AATT 8 cut(s) 235, 312, 343, 447, 455, 468, 480, 530
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 27, 139
TseI GCWGC 3 cut(s) 191, 491, 515
TspDTI ATGAA 1 cut(s) 320
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 2 cut(s) 27, 139
VpaK11BI GGWCC 2 cut(s) 163, 497
XapI RAATTY 3 cut(s) 312, 455, 530
XceI RCATGY 3 cut(s) 161, 228, 387
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.