RchiOBHm_Chr6g0283411

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025088
Physical Location & Seq
Forward (+)
46617813 .. 46618876
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
ATGGTTGATGCATGGATTAAGGCAATGAACGCAACGAAAAAGAAATATTATGCCGATTTTCGGGAGGCTGAGCTTATCGGAGTTATATCTGCTGCTATTGTGAAAATAGCTAGTGCTCCAATTGACCGTGTCAAAATACTAATACAGAATCAGAATGAGATGATCATGAATGGTCGGCTTTCAGAACCATACAAGGGGATAAAAGATTGCTTTGGCCGGATTATCAAGGATGAGGGTGTCAGCACTCTGTGGAGAGGAAACACTGCTAACGTTATCAGATACCTTCCTAGCCAAGTGTTAACCATTGGCTTCAACCATTTTTACAAGGTTCTTTTCAGCTGTGATAATCATCTTGTGGGGAACCTAGTATCAGGTGCTGCTGCTGGTTCTTCGTCTCTTTTTTCGTTGTATTCTCTCGACTATGTAAGAACACGTTTGGCAAGTGACATCAAGGCCACAAAGGGCGGTCAGAGACAGTTTCAGGGTTTGATTGATGTCTACAGAACAGCCGGTTTTCAAGGCACGTACCGGGGATTCAATATCTCTTTTGCTGGGGCTGCTGTATACCGCAGCCTCTACTTTGGACTATACGATTCTTTGAGACCTCACCTTGCTGATAGGACTAATTTCTTTTCTTGTTTCTTGCTGGGATGGGGAGTTGTCACGAGTGCTGGATTCGCATCGTACCCCATTGACACAGTGCGAAGAAGGATGATGATGACCTCGGCAATTTCAGAGAATGCCGCTTTTGCTACATTTAGGAGAATCATAAGAGATGAAGGTGTTAAGTCTCTGTACAAGGGTGCCGGGGCAAACGTATTACGCGGTGTTGCAGGTGCTGTTATGCTTGCTGTGTATGACAAGCTAAATGTGACCCTTTGTTCTTGCAACAAATCTATTGCTGCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

303

Amino Acids

33.35

Weight (kDa)

9.72

Isoelectric Point (pI)

22.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 25 - 113 3e-19 Mitochondrial carrier protein
Mito_carr PF00153 117 - 205 1.2e-15 Mitochondrial carrier protein
Mito_carr PF00153 208 - 292 5.2e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025088)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283411
rosa_rugosa Rorug06G0153800
rosa_wichuraiana Rw6G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 824
Acc36I ACCTGC 1 cut(s) 824
AccB1I GGYRCC 1 cut(s) 803
AccI GTMKAC 2 cut(s) 498, 564
AccII CGCG 1 cut(s) 825
AciI CCGC 5 cut(s) 465, 568, 744, 825, 905
AclI AACGTT 1 cut(s) 270
AcoI YGGCCR 1 cut(s) 214
AdeI CACNNNGTG 1 cut(s) 249
AfaI GTAC 3 cut(s) 527, 686, 797
AfiI CCNNNNNNNGG 2 cut(s) 60, 194
AflIII ACRYGT 1 cut(s) 431
AgsI TTSAA 3 cut(s) 313, 518, 538
AluBI AGCT 4 cut(s) 73, 110, 339, 865
AluI AGCT 4 cut(s) 73, 110, 339, 865
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 4 cut(s) 399, 466, 595, 795
AlwNI CAGNNNCTG 2 cut(s) 377, 839
AoxI GGCC 2 cut(s) 214, 453
ApeKI GCWGC 6 cut(s) 92, 377, 380, 557, 570, 902
AsuC2I CCSGG 2 cut(s) 530, 808
AsuHPI GGTGA 1 cut(s) 599
BanI GGYRCC 1 cut(s) 803
BauI CACGAG 1 cut(s) 664
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 6 cut(s) 79, 364, 367, 544, 582, 889
BccI CCATC 1 cut(s) 645
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 2 cut(s) 530, 808
BcoDI GTCTC 4 cut(s) 399, 466, 595, 795
BfaI CTAG 3 cut(s) 111, 288, 365
BfmI CTRYAG 1 cut(s) 499
BfuAI ACCTGC 1 cut(s) 824
BisI GCNGC 8 cut(s) 93, 378, 381, 558, 571, 744, 903, 906
BlpI GCTNAGC 1 cut(s) 69
BlsI GCNGC 8 cut(s) 94, 379, 382, 559, 572, 745, 904, 907
Bme1390I CCNGG 2 cut(s) 530, 808
BmiI GGNNCC 2 cut(s) 362, 805
BmrFI CCNGG 2 cut(s) 530, 808
BmsI GCATC 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 69
BpuMI CCSGG 2 cut(s) 530, 808
BsaAI YACGTR 1 cut(s) 525
BsaBI GATNNNNATC 2 cut(s) 348, 679
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 3 cut(s) 529, 723, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 60, 194
Bse118I RCCGGY 1 cut(s) 509
Bse3DI GCAATG 1 cut(s) 30
Bse8I GATNNNNATC 2 cut(s) 348, 679
BseDI CCNNGG 3 cut(s) 529, 723, 807
BseGI GGATG 3 cut(s) 235, 656, 717
BseJI GATNNNNATC 2 cut(s) 348, 679
BseLI CCNNNNNNNGG 2 cut(s) 60, 194
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 6 cut(s) 79, 364, 367, 544, 582, 889
BseYI CCCAGC 2 cut(s) 551, 646
Bsh1236I CGCG 1 cut(s) 825
BshFI GGCC 2 cut(s) 216, 455
BshNI GGYRCC 1 cut(s) 803
BsiHKAI GWGCWC 1 cut(s) 118
BsiSI CCGG 4 cut(s) 217, 510, 529, 807
BslI CCNNNNNNNGG 2 cut(s) 60, 194
BsmAI GTCTC 4 cut(s) 399, 466, 595, 795
BsmBI CGTCTC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 2 cut(s) 216, 455
Bso31I GGTCTC 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 795
Bsp143I GATC 1 cut(s) 162
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 5 cut(s) 465, 568, 744, 825, 905
BspANI GGCC 2 cut(s) 216, 455
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 825
BspHI TCATGA 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 362, 805
BspMI ACCTGC 1 cut(s) 824
BspT107I GGYRCC 1 cut(s) 803
BspTNI GGTCTC 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 509
BsrGI TGTACA 1 cut(s) 795
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 3 cut(s) 529, 723, 807
BssMI GATC 1 cut(s) 162
BssNAI GTATAC 1 cut(s) 565
BssSI CACGAG 1 cut(s) 664
Bst1107I GTATAC 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 664
Bst4CI ACNGT 3 cut(s) 128, 477, 700
BstAUI TGTACA 1 cut(s) 795
BstBAI YACGTR 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 849
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 235, 656, 717
BstFNI CGCG 1 cut(s) 825
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 4 cut(s) 399, 466, 595, 795
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 29, 557, 677, 749
BstSCI CCNGG 2 cut(s) 528, 806
BstSFI CTRYAG 1 cut(s) 499
BstUI CGCG 1 cut(s) 825
BstV1I GCAGC 6 cut(s) 79, 364, 367, 544, 582, 889
BstZ17I GTATAC 1 cut(s) 565
BsuRI GGCC 2 cut(s) 216, 455
BtsCI GGATG 3 cut(s) 235, 656, 717
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 261, 705
BveI ACCTGC 1 cut(s) 824
Cac8I GCNNGC 1 cut(s) 849
CaiI CAGNNNCTG 2 cut(s) 377, 839
CciI TCATGA 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 509
Csp6I GTAC 3 cut(s) 526, 685, 796
CviAII CATG 2 cut(s) 12, 166
CviQI GTAC 3 cut(s) 526, 685, 796
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DraIII CACNNNGTG 1 cut(s) 249
EaeI YGGCCR 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 595
EcoT22I ATGCAT 1 cut(s) 13
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 2 cut(s) 15, 169
FatI CATG 2 cut(s) 11, 165
FbaI TGATCA 1 cut(s) 162
FblI GTMKAC 2 cut(s) 498, 564
Fnu4HI GCNGC 8 cut(s) 93, 378, 381, 558, 571, 744, 903, 906
FokI GGATG 3 cut(s) 242, 663, 724
Fsp4HI GCNGC 8 cut(s) 93, 378, 381, 558, 571, 744, 903, 906
FspBI CTAG 3 cut(s) 111, 288, 365
GluI GCNGC 8 cut(s) 93, 378, 381, 558, 571, 744, 903, 906
GsaI CCCAGC 2 cut(s) 555, 650
HaeIII GGCC 2 cut(s) 216, 455
HapII CCGG 4 cut(s) 217, 510, 529, 807
Hin1II CATG 2 cut(s) 15, 169
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 5 cut(s) 148, 534, 593, 675, 765
HpaI GTTAAC 1 cut(s) 300
HpaII CCGG 4 cut(s) 217, 510, 529, 807
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 3 cut(s) 300, 499, 565
Hpy188I TCNGA 6 cut(s) 80, 153, 184, 278, 471, 736
Hpy188III TCNNGA 4 cut(s) 62, 166, 416, 664
Hpy8I GTNNAC 3 cut(s) 300, 499, 565
HpyAV CCTTC 3 cut(s) 293, 702, 773
HpyCH4III ACNGT 3 cut(s) 128, 477, 700
HpyCH4IV ACGT 4 cut(s) 270, 433, 524, 816
HpyCH4V TGCA 3 cut(s) 11, 833, 888
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 557, 677, 749
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 4 cut(s) 270, 433, 524, 816
Hsp92II CATG 2 cut(s) 15, 169
Ksp22I TGATCA 1 cut(s) 162
KspAI GTTAAC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 6 cut(s) 79, 364, 367, 544, 582, 889
LweI GCATC 1 cut(s) 689
MaeI CTAG 3 cut(s) 111, 288, 365
MaeII ACGT 4 cut(s) 270, 433, 524, 816
MaeIII GTNAC 3 cut(s) 443, 661, 871
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 381, 717
MfeI CAATTG 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 3 cut(s) 120, 625, 729
MnlI CCTC 6 cut(s) 58, 226, 248, 584, 615, 733
Mph1103I ATGCAT 1 cut(s) 13
MseI TTAA 4 cut(s) 18, 299, 786, 910
MspA1I CMGCKG 1 cut(s) 339
MspI CCGG 4 cut(s) 217, 510, 529, 807
MspR9I CCNGG 2 cut(s) 530, 808
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 1 cut(s) 745
MvnI CGCG 1 cut(s) 825
MwoI GCNNNNNNNGC 4 cut(s) 29, 557, 677, 749
NciI CCSGG 2 cut(s) 530, 808
NdeII GATC 1 cut(s) 162
NlaIII CATG 2 cut(s) 15, 169
NlaIV GGNNCC 2 cut(s) 362, 805
NmeAIII GCCGAG 1 cut(s) 704
NmuCI GTSAC 3 cut(s) 443, 661, 871
NsiI ATGCAT 1 cut(s) 13
PagI TCATGA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 824
PctI GAATGC 1 cut(s) 745
PfeI GAWTC 5 cut(s) 148, 534, 593, 675, 765
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 8 cut(s) 94, 379, 382, 559, 572, 745, 904, 907
Ppu21I YACGTR 1 cut(s) 525
Psp1406I AACGTT 1 cut(s) 270
PspFI CCCAGC 2 cut(s) 551, 646
PspN4I GGNNCC 2 cut(s) 362, 805
PstNI CAGNNNCTG 2 cut(s) 377, 839
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 339
RsaI GTAC 3 cut(s) 527, 686, 797
RsaNI GTAC 3 cut(s) 526, 685, 796
SaqAI TTAA 4 cut(s) 18, 299, 786, 910
SatI GCNGC 8 cut(s) 93, 378, 381, 558, 571, 744, 903, 906
Sau3AI GATC 1 cut(s) 162
ScrFI CCNGG 2 cut(s) 530, 808
SduI GDGCHC 1 cut(s) 118
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 1 cut(s) 499
Sse9I AATT 3 cut(s) 120, 625, 729
SsiI CCGC 5 cut(s) 465, 568, 744, 825, 905
SspI AATATT 1 cut(s) 47
SspMI CTAG 3 cut(s) 111, 288, 365
StyD4I CCNGG 2 cut(s) 528, 806
TaaI ACNGT 3 cut(s) 128, 477, 700
TaiI ACGT 4 cut(s) 273, 436, 527, 819
TaqI TCGA 1 cut(s) 417
TasI AATT 3 cut(s) 120, 625, 729
TatI WGTACW 1 cut(s) 795
TauI GCSGC 2 cut(s) 746, 908
TfiI GAWTC 5 cut(s) 148, 534, 593, 675, 765
Tru1I TTAA 4 cut(s) 18, 299, 786, 910
Tru9I TTAA 4 cut(s) 18, 299, 786, 910
TscAI CASTG 2 cut(s) 268, 705
TseFI GTSAC 3 cut(s) 443, 661, 871
TseI GCWGC 6 cut(s) 92, 377, 380, 557, 570, 902
Tsp45I GTSAC 3 cut(s) 443, 661, 871
TspDTI ATGAA 3 cut(s) 41, 182, 792
TspRI CASTG 2 cut(s) 268, 705
Tth111I GACNNNGTC 1 cut(s) 128
XmiI GTMKAC 2 cut(s) 498, 564
XspI CTAG 3 cut(s) 111, 288, 365
Zsp2I ATGCAT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.