Rw6G023040

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0025088
Physical Location & Seq
Forward (+)
45228857 .. 45236201
7345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023040.1

Sequence Viewer

Length: 669 bp
ATGATCATGAATGGTCGGCTTTCAGAACCATACAAAGGGATAATGAAAGAATATTGCTTTGGCCGGATATTCAAGGATGAGGGTGTCAGCACTCTGTGGAGACGAAACACTGCTAACGTTATCAGATACCTTCCTAGCCAAGTTCTTTTCAGCTGGGATAATCATCTTGTGGGGAACCTAGTATCAGGTGCTGCTGCTGGTTCTTCGTCTCTTTTTTCGTTGTATTCTCTCGACTATGTAAGAACACGTTTGGCAAGTGACATCAAGGCCACAAAGGGCGGTCAGAGACAGTTTCAGGGTTTGATTGATGTCTACAGAACAGCCGGTTTTCAAGGCACGTACCGAGGATTCAATATCTCTTTTGCTGGGGCTGCTGTGGCTAATTTCTTTTCTTGTTTCTTACTGGGATGGGGAGTTGTCACGACTGCTGGATTGGCATCGTACCCCATTGACACAGTGCGAAGAAGGATGATGATGACCTCGGCAATCTCTGAAAATGCCGCTTTTGCTACATTTAGGAGAATCATAAGAGATGAAGGTGTTAAGTCTCTGTACAAGGGTGCCGGGGCAAACGTATTACGCGGTGTTGCAGGTGCTCTTATGCTTGCTATGTATGACAAGCTAAATGTGACCCTTTGTTCTTGTAACAAATCTATTGCTGCGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

222

Amino Acids

24.29

Weight (kDa)

9.89

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 55 - 130 3.5e-11 Mitochondrial carrier protein
Mito_carr PF00153 128 - 211 3.1e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025088)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0283411
rosa_rugosa Rorug06G0153800
rosa_wichuraiana Rw6G023040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 581
Acc36I ACCTGC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 560
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 582
AciI CCGC 4 cut(s) 279, 501, 582, 662
AclI AACGTT 1 cut(s) 117
AcoI YGGCCR 1 cut(s) 61
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 3 cut(s) 341, 443, 554
AfiI CCNNNNNNNGG 1 cut(s) 35
AflIII ACRYGT 1 cut(s) 245
AgsI TTSAA 3 cut(s) 73, 332, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 2 cut(s) 153, 622
AluI AGCT 2 cut(s) 153, 622
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 4 cut(s) 94, 213, 280, 552
AlwNI CAGNNNCTG 1 cut(s) 191
AoxI GGCC 2 cut(s) 61, 267
ApeKI GCWGC 4 cut(s) 191, 194, 371, 659
AsuC2I CCSGG 1 cut(s) 565
BanI GGYRCC 1 cut(s) 560
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 4 cut(s) 178, 181, 358, 646
BccI CCATC 1 cut(s) 402
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 565
BcoDI GTCTC 4 cut(s) 94, 213, 280, 552
BfaI CTAG 2 cut(s) 135, 179
BfmI CTRYAG 1 cut(s) 313
BfuAI ACCTGC 1 cut(s) 581
BisI GCNGC 6 cut(s) 192, 195, 372, 501, 660, 663
BlsI GCNGC 6 cut(s) 193, 196, 373, 502, 661, 664
Bme1390I CCNGG 1 cut(s) 565
BmiI GGNNCC 2 cut(s) 176, 562
BmrFI CCNGG 1 cut(s) 565
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 446
BmuI ACTGGG 1 cut(s) 413
BpuMI CCSGG 1 cut(s) 565
BsaAI YACGTR 1 cut(s) 339
BsaBI GATNNNNATC 2 cut(s) 162, 436
BsaJI CCNNGG 3 cut(s) 343, 480, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 408
Bse8I GATNNNNATC 2 cut(s) 162, 436
BseDI CCNNGG 3 cut(s) 343, 480, 564
BseGI GGATG 3 cut(s) 82, 413, 474
BseJI GATNNNNATC 2 cut(s) 162, 436
BseLI CCNNNNNNNGG 1 cut(s) 35
BseNI ACTGG 1 cut(s) 408
BseXI GCAGC 4 cut(s) 178, 181, 358, 646
BseYI CCCAGC 2 cut(s) 153, 365
Bsh1236I CGCG 1 cut(s) 582
BshFI GGCC 2 cut(s) 63, 269
BshNI GGYRCC 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 3 cut(s) 64, 324, 564
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 4 cut(s) 94, 213, 280, 552
BsmBI CGTCTC 2 cut(s) 94, 213
BsnI GGCC 2 cut(s) 63, 269
Bsp1286I GDGCHC 1 cut(s) 598
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 4 cut(s) 279, 501, 582, 662
BspANI GGCC 2 cut(s) 63, 269
BspFNI CGCG 1 cut(s) 582
BspHI TCATGA 1 cut(s) 6
BspLI GGNNCC 2 cut(s) 176, 562
BspMI ACCTGC 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 1 cut(s) 408
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 343, 480, 564
BssMI GATC 1 cut(s) 3
Bst4CI ACNGT 2 cut(s) 291, 457
BstAUI TGTACA 1 cut(s) 552
BstBAI YACGTR 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 606
BstF5I GGATG 3 cut(s) 82, 413, 474
BstFNI CGCG 1 cut(s) 582
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 4 cut(s) 94, 213, 280, 552
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 4 cut(s) 371, 377, 434, 506
BstSCI CCNGG 1 cut(s) 563
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 1 cut(s) 582
BstV1I GCAGC 4 cut(s) 178, 181, 358, 646
BsuRI GGCC 2 cut(s) 63, 269
BtsCI GGATG 3 cut(s) 82, 413, 474
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 108, 462
BveI ACCTGC 1 cut(s) 581
Cac8I GCNNGC 1 cut(s) 606
CaiI CAGNNNCTG 1 cut(s) 191
CciI TCATGA 1 cut(s) 6
Cfr10I RCCGGY 1 cut(s) 323
Csp6I GTAC 3 cut(s) 340, 442, 553
CviAII CATG 1 cut(s) 7
CviQI GTAC 3 cut(s) 340, 442, 553
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraIII CACNNNGTG 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 61
Esp3I CGTCTC 2 cut(s) 94, 213
FaeI CATG 1 cut(s) 10
FaiI YATR 7 cut(s) 8, 31, 237, 527, 602, 611, 615
FatI CATG 1 cut(s) 6
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 6 cut(s) 192, 195, 372, 501, 660, 663
FokI GGATG 3 cut(s) 89, 420, 481
Fsp4HI GCNGC 6 cut(s) 192, 195, 372, 501, 660, 663
FspBI CTAG 2 cut(s) 135, 179
GluI GCNGC 6 cut(s) 192, 195, 372, 501, 660, 663
GsaI CCCAGC 2 cut(s) 157, 369
HaeIII GGCC 2 cut(s) 63, 269
HapII CCGG 3 cut(s) 64, 324, 564
Hin1II CATG 1 cut(s) 10
HinfI GANTC 2 cut(s) 348, 522
HpaII CCGG 3 cut(s) 64, 324, 564
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 4 cut(s) 25, 125, 285, 493
Hpy188III TCNNGA 3 cut(s) 7, 230, 421
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 3 cut(s) 140, 459, 530
HpyCH4III ACNGT 2 cut(s) 291, 457
HpyCH4IV ACGT 4 cut(s) 117, 247, 338, 573
HpyCH4V TGCA 1 cut(s) 590
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 377, 434, 506
HpySE526I ACGT 4 cut(s) 117, 247, 338, 573
Hsp92II CATG 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
Lsp1109I GCAGC 4 cut(s) 178, 181, 358, 646
LweI GCATC 1 cut(s) 446
MaeI CTAG 2 cut(s) 135, 179
MaeII ACGT 4 cut(s) 117, 247, 338, 573
MaeIII GTNAC 4 cut(s) 257, 418, 628, 644
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 195, 474
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 1 cut(s) 382
MnlI CCTC 3 cut(s) 73, 338, 490
MseI TTAA 2 cut(s) 543, 667
MspA1I CMGCKG 1 cut(s) 153
MspI CCGG 3 cut(s) 64, 324, 564
MspR9I CCNGG 1 cut(s) 565
MvnI CGCG 1 cut(s) 582
MwoI GCNNNNNNNGC 4 cut(s) 371, 377, 434, 506
NciI CCSGG 1 cut(s) 565
NdeII GATC 1 cut(s) 3
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 2 cut(s) 176, 562
NmeAIII GCCGAG 1 cut(s) 461
NmuCI GTSAC 3 cut(s) 257, 418, 628
PagI TCATGA 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 581
PfeI GAWTC 2 cut(s) 348, 522
PkrI GCNGC 6 cut(s) 193, 196, 373, 502, 661, 664
Ppu21I YACGTR 1 cut(s) 339
Psp1406I AACGTT 1 cut(s) 117
PspFI CCCAGC 2 cut(s) 153, 365
PspN4I GGNNCC 2 cut(s) 176, 562
PstNI CAGNNNCTG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 153
RsaI GTAC 3 cut(s) 341, 443, 554
RsaNI GTAC 3 cut(s) 340, 442, 553
SaqAI TTAA 2 cut(s) 543, 667
SatI GCNGC 6 cut(s) 192, 195, 372, 501, 660, 663
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 1 cut(s) 565
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 1 cut(s) 446
SfcI CTRYAG 1 cut(s) 313
Sse9I AATT 1 cut(s) 382
SsiI CCGC 4 cut(s) 279, 501, 582, 662
SspI AATATT 1 cut(s) 53
SspMI CTAG 2 cut(s) 135, 179
StyD4I CCNGG 1 cut(s) 563
TaaI ACNGT 2 cut(s) 291, 457
TaiI ACGT 4 cut(s) 120, 250, 341, 576
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 552
TauI GCSGC 2 cut(s) 503, 665
TfiI GAWTC 2 cut(s) 348, 522
Tru1I TTAA 2 cut(s) 543, 667
Tru9I TTAA 2 cut(s) 543, 667
TscAI CASTG 2 cut(s) 115, 462
TseFI GTSAC 3 cut(s) 257, 418, 628
TseI GCWGC 4 cut(s) 191, 194, 371, 659
Tsp45I GTSAC 3 cut(s) 257, 418, 628
TspDTI ATGAA 3 cut(s) 23, 59, 549
TspRI CASTG 2 cut(s) 115, 462
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 2 cut(s) 135, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.