Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0025088

Physical Location & Seq

Genomic Coordinates Forward (+)

22088162 .. 22089478

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0153800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGATTTGGATGTGCTTAGTTGGAATTGCAGAGGAATCTGCAACGATGCCACAACCAGGGCTTTGAAGGATCTATGTTCTCAAAATCGTCCACAGATCGTGTTTTTGTGTGAGACGAAGATCAGTAGACTTGAAGATTTCAAAAATTTACGTAGAGCGTTAGGGTTTGCTCACGCGGAGAAGGTGTTGAGTGTAGGACAGGCAGGAGGGTTGGGTATTTTCTGGAATGATGAAGTGAAGATCCATGTTAGGACTAAATCTACGCATCATTTTGATGCAGTGGTTGTAGGGGACTCTGGGACTCCATCTTGGCGTCTGACTGGTTTTTATGGCCATGCTCGTACTAGCGAGAGAGATAGATCATGGCAATTGCTGCGTGATCTCTCTGACCTTGATTTGTTGCCTTGGGTGGTGATAGGAGACTTTAACGAGATTCTGAATAGTGGGGAGAAGATAGCCTGGCCTATTCGACCAGAGAGGGTGATTCATCTGGCACCCTCAGACTCCGATCATGTTCCTGTTCTGTTACGTGCGAGTCAAGCTCCTCTATTTGCAAGACCTAGGGTCCATCATTTTAAGTTTGAAGCCTTTTGGTTGCAGCACCCTGATTGTGATGGGGTTGTGAAAGCAGCTTGGGGTACGGTGGTCTCAGGCACCCCTATGTTTTGTGCTGCGAAGAAGATCATGTACACTAGGATTCACCTAGACAAATGGCAGAAAGAGACTTTTAAGAGTCGGCAATTGCTGATGTCGAGTATCCGAGCTAGATTAGAGGAATTGATGAATGTGTTCCCGTCGGTGTCAATACAAGTTGAGAAGAAAGAGCTAATGGATAAGCTTCAGAGCCTATTATTCCAAGAGGAACTATTTTGGAAGCAGCGTGCTAAAATTACATGGCTGAAGGAGGGGGATAGAAATACCGGGTTCTTTCATCGGAAAACGGAAAATAAGAAGCGCAAGAATACTTTGCAAGGCTTATTTGATGAGGAGGGGAATTGGCATGAGGATGATGTGGGTATTGAGAATGTGATCACTTCATATTTCTCTAAAATGTTCAAAGCTTCCGAGCTTGATTCTGAAGCTCTGAATTTGACTATGGAGGCTATTACTCCTTGTGTTACACAAGAAATGAATGATCATGCTTTGTGCCACTTATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map04020 map04022 map04217 map04218 map05012 map05016 map05166

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

386

Amino Acids

44.5

Weight (kDa)

7.25

Isoelectric Point (pI)

36.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	6 - 161	1.8e-14	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025088)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0283411
rosa_rugosa	Rorug06G0153800
rosa_wichuraiana	Rw6G023040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	493, 653
AccI	GTMKAC	1 cut(s)	127
AccII	CGCG	1 cut(s)	176
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	2 cut(s)	78, 235
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	2 cut(s)	145, 1087
AcuI	CTGAAG	3 cut(s)	824, 920, 1098
AcyI	GRCGYC	1 cut(s)	313
AfaI	GTAC	3 cut(s)	343, 640, 689
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	5 cut(s)	67, 134, 142, 584, 1057
AhdI	GACNNNNNGTC	1 cut(s)	563
AjnI	CCWGG	2 cut(s)	56, 458
AluBI	AGCT	8 cut(s)	542, 632, 764, 826, 838, 1061, 1069, 1082
AluI	AGCT	8 cut(s)	542, 632, 764, 826, 838, 1061, 1069, 1082
Alw26I	GTCTC	4 cut(s)	107, 414, 652, 716
AlwI	GGATC	2 cut(s)	78, 235
AoxI	GGCC	2 cut(s)	331, 461
ApeKI	GCWGC	5 cut(s)	373, 598, 629, 671, 877
ApoI	RAATTY	2 cut(s)	145, 1087
Asp700I	GAANNNNTTC	1 cut(s)	788
AspA2I	CCTAGG	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	957
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	1 cut(s)	922
AsuHPI	GGTGA	3 cut(s)	424, 493, 692
AvaII	GGWCC	1 cut(s)	565
AvrII	CCTAGG	1 cut(s)	560
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
BalI	TGGCCA	1 cut(s)	333
BanI	GGYRCC	2 cut(s)	493, 653
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BbvI	GCAGC	5 cut(s)	360, 610, 641, 658, 889
BccI	CCATC	3 cut(s)	313, 576, 608
BciT130I	CCWGG	2 cut(s)	58, 460
BciVI	GTATCC	1 cut(s)	767
BclI	TGATCA	2 cut(s)	1029, 1135
BcnI	CCSGG	1 cut(s)	922
BcoDI	GTCTC	4 cut(s)	107, 414, 652, 716
BfaI	CTAG	5 cut(s)	345, 561, 693, 704, 765
BfuI	GTATCC	1 cut(s)	767
BisI	GCNGC	5 cut(s)	374, 599, 630, 672, 878
BlnI	CCTAGG	1 cut(s)	560
BlsI	GCNGC	5 cut(s)	375, 600, 631, 673, 879
Bme1390I	CCNGG	3 cut(s)	58, 460, 922
Bme18I	GGWCC	1 cut(s)	565
BmeRI	GACNNNNNGTC	1 cut(s)	563
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	3 cut(s)	495, 566, 655
BmrFI	CCNGG	3 cut(s)	58, 460, 922
BmsI	GCATC	3 cut(s)	37, 265, 274
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BpuMI	CCSGG	1 cut(s)	922
BsaAI	YACGTR	2 cut(s)	152, 530
BsaHI	GRCGYC	1 cut(s)	313
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	3 cut(s)	57, 404, 560
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	325
BseBI	CCWGG	2 cut(s)	58, 460
BseDI	CCNNGG	3 cut(s)	57, 404, 560
BseGI	GGATG	2 cut(s)	16, 1012
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	513, 663
BseNI	ACTGG	1 cut(s)	325
BseRI	GAGGAG	2 cut(s)	534, 1001
BseXI	GCAGC	5 cut(s)	360, 610, 641, 658, 889
Bsh1236I	CGCG	1 cut(s)	176
BshFI	GGCC	2 cut(s)	333, 463
BshNI	GGYRCC	2 cut(s)	493, 653
BsiSI	CCGG	1 cut(s)	921
BslFI	GGGAC	2 cut(s)	305, 313
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	4 cut(s)	107, 414, 652, 716
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	2 cut(s)	305, 313
BsnI	GGCC	2 cut(s)	333, 463
Bso31I	GGTCTC	1 cut(s)	652
Bsp1407I	TGTACA	1 cut(s)	687
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	333, 463
BspCNI	CTCAG	2 cut(s)	512, 662
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	495, 566, 655
BspPI	GGATC	2 cut(s)	78, 235
BspT107I	GGYRCC	2 cut(s)	493, 653
BspTNI	GGTCTC	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	3 cut(s)	57, 404, 560
BssNI	GRCGYC	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	404, 560
Bst2UI	CCWGG	2 cut(s)	58, 460
Bst4CI	ACNGT	1 cut(s)	643
BstACI	GRCGYC	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	373
BstAUI	TGTACA	1 cut(s)	687
BstBAI	YACGTR	2 cut(s)	152, 530
BstC8I	GCNNGC	1 cut(s)	882
BstDEI	CTNAG	3 cut(s)	17, 499, 649
BstF5I	GGATG	2 cut(s)	16, 1012
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	957
BstMAI	GTCTC	4 cut(s)	107, 414, 652, 716
BstMWI	GCNNNNNNNGC	2 cut(s)	373, 539
BstNI	CCWGG	2 cut(s)	58, 460
BstSCI	CCNGG	3 cut(s)	56, 458, 920
BstSNI	TACGTA	1 cut(s)	152
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	5 cut(s)	360, 610, 641, 658, 889
BstX2I	RGATCY	2 cut(s)	70, 240
BstYI	RGATCY	2 cut(s)	70, 240
BsuI	GTATCC	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	333, 463
BtsCI	GGATG	2 cut(s)	16, 1012
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	882
CfoI	GCGC	1 cut(s)	957
Cfr13I	GGNCC	1 cut(s)	565
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	3 cut(s)	342, 639, 688
CviAII	CATG	8 cut(s)	245, 335, 363, 512, 685, 894, 1001, 1139
CviQI	GTAC	3 cut(s)	342, 639, 688
DdeI	CTNAG	3 cut(s)	17, 499, 649
DriI	GACNNNNNGTC	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	331
Eam1105I	GACNNNNNGTC	1 cut(s)	563
Eco105I	TACGTA	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	404, 560
Eco31I	GGTCTC	1 cut(s)	652
Eco47I	GGWCC	1 cut(s)	565
Eco57I	CTGAAG	3 cut(s)	824, 920, 1098
EcoRII	CCWGG	2 cut(s)	56, 458
EcoT14I	CCWWGG	2 cut(s)	404, 560
ErhI	CCWWGG	2 cut(s)	404, 560
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	8 cut(s)	248, 338, 366, 515, 688, 897, 1004, 1142
FaqI	GGGAC	2 cut(s)	305, 313
FatI	CATG	8 cut(s)	244, 334, 362, 511, 684, 893, 1000, 1138
FbaI	TGATCA	2 cut(s)	1029, 1135
FblI	GTMKAC	1 cut(s)	127
Fnu4HI	GCNGC	5 cut(s)	374, 599, 630, 672, 878
FokI	GGATG	2 cut(s)	23, 1019
Fsp4HI	GCNGC	5 cut(s)	374, 599, 630, 672, 878
FspBI	CTAG	5 cut(s)	345, 561, 693, 704, 765
GlaI	GCGC	1 cut(s)	956
GluI	GCNGC	5 cut(s)	374, 599, 630, 672, 878
HaeIII	GGCC	2 cut(s)	333, 463
HapII	CCGG	1 cut(s)	921
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	957
Hin1I	GRCGYC	1 cut(s)	313
Hin1II	CATG	8 cut(s)	248, 338, 366, 515, 688, 897, 1004, 1142
Hin6I	GCGC	1 cut(s)	955
HinP1I	GCGC	1 cut(s)	955
HindIII	AAGCTT	2 cut(s)	836, 1059
HpaII	CCGG	1 cut(s)	921
HphI	GGTGA	3 cut(s)	424, 493, 692
Hpy166II	GTNNAC	3 cut(s)	92, 128, 690
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	3 cut(s)	92, 128, 690
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	3 cut(s)	61, 175, 895
HpyCH4III	ACNGT	1 cut(s)	643
HpyCH4IV	ACGT	2 cut(s)	151, 529
HpyCH4V	TGCA	6 cut(s)	30, 42, 278, 554, 598, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	373, 539
HpyF3I	CTNAG	3 cut(s)	17, 499, 649
HpySE526I	ACGT	2 cut(s)	151, 529
Hsp92I	GRCGYC	1 cut(s)	313
Hsp92II	CATG	8 cut(s)	248, 338, 366, 515, 688, 897, 1004, 1142
HspAI	GCGC	1 cut(s)	955
Ksp22I	TGATCA	2 cut(s)	1029, 1135
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	5 cut(s)	360, 610, 641, 658, 889
LweI	GCATC	3 cut(s)	37, 265, 274
MaeI	CTAG	5 cut(s)	345, 561, 693, 704, 765
MaeII	ACGT	2 cut(s)	151, 529
MaeIII	GTNAC	2 cut(s)	525, 1117
MboII	GAAGA	7 cut(s)	130, 146, 250, 463, 688, 691, 829
MfeI	CAATTG	2 cut(s)	368, 740
MflI	RGATCY	2 cut(s)	70, 240
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	8 cut(s)	25, 145, 368, 740, 776, 888, 994, 1087
MluNI	TGGCCA	1 cut(s)	333
MlyI	GAGTC	5 cut(s)	287, 295, 497, 544, 742
Mox20I	TGGCCA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	788
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	3 cut(s)	426, 576, 729
MslI	CAYNNNNRTG	3 cut(s)	273, 659, 1005
Msp20I	TGGCCA	1 cut(s)	333
MspI	CCGG	1 cut(s)	921
MspR9I	CCNGG	3 cut(s)	58, 460, 922
MunI	CAATTG	2 cut(s)	368, 740
MvaI	CCWGG	2 cut(s)	58, 460
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	2 cut(s)	373, 539
NciI	CCSGG	1 cut(s)	922
NlaIII	CATG	8 cut(s)	248, 338, 366, 515, 688, 897, 1004, 1142
NlaIV	GGNNCC	3 cut(s)	495, 566, 655
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	5 cut(s)	36, 433, 484, 697, 1073
PkrI	GCNGC	5 cut(s)	375, 600, 631, 673, 879
PleI	GAGTC	5 cut(s)	287, 295, 497, 543, 741
PpsI	GAGTC	5 cut(s)	287, 295, 497, 543, 741
Ppu21I	YACGTR	2 cut(s)	152, 530
Psp6I	CCWGG	2 cut(s)	56, 458
PspGI	CCWGG	2 cut(s)	56, 458
PspN4I	GGNNCC	3 cut(s)	495, 566, 655
PspPI	GGNCC	1 cut(s)	565
PsuI	RGATCY	2 cut(s)	70, 240
RsaI	GTAC	3 cut(s)	343, 640, 689
RsaNI	GTAC	3 cut(s)	342, 639, 688
RseI	CAYNNNNRTG	3 cut(s)	273, 659, 1005
SaqAI	TTAA	3 cut(s)	426, 576, 729
SatI	GCNGC	5 cut(s)	374, 599, 630, 672, 878
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	5 cut(s)	287, 295, 497, 544, 742
ScrFI	CCNGG	3 cut(s)	58, 460, 922
SfaNI	GCATC	3 cut(s)	37, 265, 274
SinI	GGWCC	1 cut(s)	565
SmiMI	CAYNNNNRTG	3 cut(s)	273, 659, 1005
SnaBI	TACGTA	1 cut(s)	152
Sse9I	AATT	8 cut(s)	25, 145, 368, 740, 776, 888, 994, 1087
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	5 cut(s)	345, 561, 693, 704, 765
StyD4I	CCNGG	3 cut(s)	56, 458, 920
StyI	CCWWGG	2 cut(s)	404, 560
TaaI	ACNGT	1 cut(s)	643
TaiI	ACGT	2 cut(s)	154, 532
TaqI	TCGA	2 cut(s)	469, 752
TasI	AATT	8 cut(s)	25, 145, 368, 740, 776, 888, 994, 1087
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	5 cut(s)	36, 433, 484, 697, 1073
Tru1I	TTAA	3 cut(s)	426, 576, 729
Tru9I	TTAA	3 cut(s)	426, 576, 729
TscAI	CASTG	1 cut(s)	285
TseI	GCWGC	5 cut(s)	373, 598, 629, 671, 877
TspDTI	ATGAA	6 cut(s)	246, 476, 797, 920, 1026, 1145
TspGWI	ACGGA	1 cut(s)	956
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	565
XapI	RAATTY	2 cut(s)	145, 1087
XmaJI	CCTAGG	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	5 cut(s)	345, 561, 693, 704, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.