RchiOBHm_Chr6g0299801

60s ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020156
Physical Location & Seq
Forward (+)
60833504 .. 60834326
823 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 156 bp
ATGCCTTCACACAAGTCCTTAATCATCAAGAAGAAGCTTGGCAAGAAGATGAGGCAGAACAGGCCCATCCCTCACTGGATCCGTCTCAGGACTGACAACAAAATCAGGTACAATGCTAAGCGCAGGCACTGGCGCCGCACCAAGCTCGGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L39

Protein Analysis

51

Amino Acids

6.39

Weight (kDa)

12.0

Isoelectric Point (pI)

68.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L39 PF00832 9 - 49 2.7e-22 Ribosomal L39 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020156)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02190
fragaria_vesca FvH4_2g40780 FvH4_2g40780
rosa_chinensis RchiOBHm_Chr6g0299801
rosa_multiflora Rmu_ssc0000158.1_g000004
rosa_rugosa Rorug06G0292400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 1 cut(s) 136
AclWI GGATC 2 cut(s) 73, 86
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 147
AjuI GAANNNNNNNTTGG 1 cut(s) 134
AluBI AGCT 2 cut(s) 37, 145
AluI AGCT 2 cut(s) 37, 145
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 2 cut(s) 73, 86
AlwNI CAGNNNCTG 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 62
AspLEI GCGC 2 cut(s) 123, 135
AspS9I GGNCC 1 cut(s) 63
AvaI CYCGRG 1 cut(s) 146
BamHI GGATCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 132
BccI CCATC 1 cut(s) 74
BcgI CGANNNNNNTGC 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 1 cut(s) 136
BlpI GCTNAGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 137
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 80, 134
Bpu1102I GCTNAGC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 80, 134
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 2 cut(s) 80, 134
BshFI GGCC 1 cut(s) 64
BshNI GGYRCC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsnI GGCC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 146
Bsp143I GATC 1 cut(s) 78
Bsp1720I GCTNAGC 1 cut(s) 117
BspACI CCGC 1 cut(s) 136
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 80, 134
BspPI GGATC 2 cut(s) 73, 86
BspT107I GGYRCC 1 cut(s) 132
BsrI ACTGG 2 cut(s) 80, 134
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 133
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 2 cut(s) 86, 117
BstF5I GGATG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 2 cut(s) 123, 135
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 73, 127
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 129
CfoI GCGC 2 cut(s) 123, 135
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 3 cut(s) 37, 64, 145
CviKI_1 RGCY 3 cut(s) 37, 64, 145
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 86, 117
DinI GGCGCC 1 cut(s) 134
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 146
EgeI GGCGCC 1 cut(s) 134
EheI GGCGCC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 136
GlaI GCGC 2 cut(s) 122, 134
GluI GCNGC 1 cut(s) 136
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 1 cut(s) 64
HhaI GCGC 2 cut(s) 123, 135
Hin1I GRCGYC 1 cut(s) 133
Hin6I GCGC 2 cut(s) 121, 133
HinP1I GCGC 2 cut(s) 121, 133
HindIII AAGCTT 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 28, 88
HpyAV CCTTC 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 2 cut(s) 86, 117
Hsp92I GRCGYC 1 cut(s) 133
HspAI GCGC 2 cut(s) 121, 133
KasI GGCGCC 1 cut(s) 132
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 6 cut(s) 46, 61, 73, 91, 109, 115
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 2 cut(s) 43, 58
MflI RGATCY 1 cut(s) 78
Mly113I GGCGCC 1 cut(s) 133
MnlI CCTC 2 cut(s) 45, 81
MseI TTAA 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 61
NarI GGCGCC 1 cut(s) 133
NdeII GATC 1 cut(s) 78
NlaIV GGNNCC 2 cut(s) 80, 134
PkrI GCNGC 1 cut(s) 137
PluTI GGCGCC 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 80, 134
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 63
SetI ASST 3 cut(s) 39, 110, 147
SfoI GGCGCC 1 cut(s) 134
SsiI CCGC 1 cut(s) 136
SspDI GGCGCC 1 cut(s) 132
TauI GCSGC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 2 cut(s) 80, 134
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 2 cut(s) 80, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.