RchiOBHm_Chr6g0303221

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025063
Physical Location & Seq
Forward (+)
63036655 .. 63037827
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGGGTTTGGTTTGTCATGAGGACGGCGTGGAGAAGGACCTGAGAAGCCTGGAGGAGGACCTGGTCGGCGTTGAACGGCCATTGAGGAATTTGGGGTTTGTTTCTATACTTTCAAACGAAGTTGGGTGGTTTGATTTAGATGAGAATAACACTGGTTCACTGACATCAATCCTAGCTGCCAATGCAACATTAGTCCGAAGTGCTCTAGCTGACCGTCTATCAACAATAGTACAGAATTTATCACTCATAGCAACTGCATTTGTTATTTCCTTCACATTAAGTTGGCGTATTGCAGCTGTTGTGGTTGCTACCCTCCCCCTGCTAGTTGGAGCTTCCATTACTGAGGGATTTGGAGGAGACTACAATTGTGCTTATGCTAAAGCAACTTCCCTAGCTCGTGAAGCAATTGCCAACATACGTACTGTTGCTGCATTTGGGGCTGAGGATCGAATATCACTTCAGTTTGCATCAGAGCTAAACCATCCAAATAAGAAAGCAGTTCTTCGAGGTCACGTTTCCGGTTTTTTCTATGGCCTATCACAGTTTTTTTTCATTCTGTTCCTATGCACTCGGCCTTTGGTTTGCATTAGTTCTAATCAAGCACAAAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

204

Amino Acids

22.06

Weight (kDa)

5.61

Isoelectric Point (pI)

37.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 25 - 187 1e-29 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025063)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303221
rosa_samantha Rh6AG433800 Rh6DG432900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 453
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 2 cut(s) 88, 235
AcuI CTGAAG 1 cut(s) 443
AfaI GTAC 2 cut(s) 231, 421
AfiI CCNNNNNNNGG 1 cut(s) 55
AgsI TTSAA 2 cut(s) 74, 114
AjnI CCWGG 2 cut(s) 48, 60
AluBI AGCT 6 cut(s) 176, 209, 296, 332, 395, 475
AluI AGCT 6 cut(s) 176, 209, 296, 332, 395, 475
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 1 cut(s) 453
AoxI GGCC 3 cut(s) 77, 532, 572
ApeKI GCWGC 3 cut(s) 176, 293, 428
ApoI RAATTY 2 cut(s) 88, 235
AspS9I GGNCC 2 cut(s) 37, 58
AvaII GGWCC 2 cut(s) 37, 58
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 163, 305, 415
BccI CCATC 1 cut(s) 489
BceAI ACGGC 2 cut(s) 40, 92
BciT130I CCWGG 2 cut(s) 50, 62
BcoDI GTCTC 1 cut(s) 351
BfaI CTAG 4 cut(s) 173, 206, 323, 392
BisI GCNGC 3 cut(s) 177, 294, 429
BlsI GCNGC 3 cut(s) 178, 295, 430
Bme1390I CCNGG 2 cut(s) 50, 62
Bme18I GGWCC 2 cut(s) 37, 58
BmgT120I GGNCC 2 cut(s) 37, 58
BmrFI CCNGG 2 cut(s) 50, 62
BmsI GCATC 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 441
BsaAI YACGTR 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 518
Bsc4I CCNNNNNNNGG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 2 cut(s) 50, 62
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 32, 333, 432
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 2 cut(s) 68, 369
BseXI GCAGC 3 cut(s) 163, 305, 415
BshFI GGCC 3 cut(s) 79, 534, 574
BsiHKAI GWGCWC 1 cut(s) 205
BsiSI CCGG 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 55
BsmAI GTCTC 1 cut(s) 351
BsnI GGCC 3 cut(s) 79, 534, 574
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 1 cut(s) 445
BspANI GGCC 3 cut(s) 79, 534, 574
BspCNI CTCAG 3 cut(s) 33, 334, 433
BspHI TCATGA 1 cut(s) 16
BspPI GGATC 1 cut(s) 453
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 445
BssSI CACGAG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 50, 62
Bst4CI ACNGT 3 cut(s) 215, 424, 543
BstBAI YACGTR 1 cut(s) 419
BstDEI CTNAG 3 cut(s) 41, 342, 441
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 481
BstKTI GATC 1 cut(s) 448
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 1 cut(s) 445
BstMWI GCNNNNNNNGC 3 cut(s) 182, 401, 437
BstNI CCWGG 2 cut(s) 50, 62
BstSCI CCNGG 2 cut(s) 48, 60
BstSNI TACGTA 1 cut(s) 419
BstV1I GCAGC 3 cut(s) 163, 305, 415
BsuRI GGCC 3 cut(s) 79, 534, 574
BtsCI GGATG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 150, 158
CciI TCATGA 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 37, 58
CsiI ACCWGGT 1 cut(s) 60
Csp6I GTAC 2 cut(s) 230, 420
CviAII CATG 1 cut(s) 17
CviQI GTAC 2 cut(s) 230, 420
DdeI CTNAG 3 cut(s) 41, 342, 441
DpnI GATC 1 cut(s) 447
DpnII GATC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 77
Eco105I TACGTA 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 37, 58
Eco57I CTGAAG 1 cut(s) 443
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 2 cut(s) 37, 58
EcoRII CCWGG 2 cut(s) 48, 60
FaeI CATG 1 cut(s) 20
FaiI YATR 7 cut(s) 18, 107, 248, 375, 416, 531, 565
FalI AAGNNNNNCTT 2 cut(s) 486, 518
FatI CATG 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 177, 294, 429
FokI GGATG 1 cut(s) 468
Fsp4HI GCNGC 3 cut(s) 177, 294, 429
FspBI CTAG 4 cut(s) 173, 206, 323, 392
GluI GCNGC 3 cut(s) 177, 294, 429
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 3 cut(s) 79, 534, 574
HapII CCGG 1 cut(s) 519
Hin1II CATG 1 cut(s) 20
HpaII CCGG 1 cut(s) 519
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 197, 472
Hpy188III TCNNGA 2 cut(s) 17, 398
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 2 cut(s) 28, 280
HpyCH4III ACNGT 3 cut(s) 215, 424, 543
HpyCH4IV ACGT 2 cut(s) 418, 513
HpyCH4V TGCA 7 cut(s) 185, 257, 293, 431, 467, 567, 585
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 401, 437
HpyF3I CTNAG 3 cut(s) 41, 342, 441
HpySE526I ACGT 2 cut(s) 418, 513
Hsp92II CATG 1 cut(s) 20
Kzo9I GATC 1 cut(s) 445
LmnI GCTCC 1 cut(s) 329
LpnPI CCDG 8 cut(s) 35, 47, 53, 62, 74, 138, 332, 532
Lsp1109I GCAGC 3 cut(s) 163, 305, 415
LweI GCATC 1 cut(s) 476
MabI ACCWGGT 1 cut(s) 60
MaeI CTAG 4 cut(s) 173, 206, 323, 392
MaeII ACGT 2 cut(s) 418, 513
MaeIII GTNAC 1 cut(s) 509
MalI GATC 1 cut(s) 447
MboI GATC 1 cut(s) 445
MboII GAAGA 1 cut(s) 494
MfeI CAATTG 2 cut(s) 364, 405
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 4 cut(s) 88, 235, 364, 405
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 9 cut(s) 13, 46, 49, 78, 323, 337, 347, 436, 500
MseI TTAA 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 2 cut(s) 50, 62
MunI CAATTG 2 cut(s) 364, 405
MvaI CCWGG 2 cut(s) 50, 62
MwoI GCNNNNNNNGC 3 cut(s) 182, 401, 437
NdeII GATC 1 cut(s) 445
NlaIII CATG 1 cut(s) 20
NmeAIII GCCGAG 1 cut(s) 550
NmuCI GTSAC 1 cut(s) 509
PagI TCATGA 1 cut(s) 16
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 178, 295, 430
Ppu21I YACGTR 1 cut(s) 419
PpuMI RGGWCCY 2 cut(s) 37, 58
Psp5II RGGWCCY 2 cut(s) 37, 58
Psp6I CCWGG 2 cut(s) 48, 60
PspGI CCWGG 2 cut(s) 48, 60
PspPI GGNCC 2 cut(s) 37, 58
PspPPI RGGWCCY 2 cut(s) 37, 58
PsyI GACNNNGTC 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 231, 421
RsaNI GTAC 2 cut(s) 230, 420
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 3 cut(s) 177, 294, 429
Sau3AI GATC 1 cut(s) 445
Sau96I GGNCC 2 cut(s) 37, 58
ScrFI CCNGG 2 cut(s) 50, 62
SduI GDGCHC 1 cut(s) 205
SexAI ACCWGGT 1 cut(s) 60
SfaNI GCATC 1 cut(s) 476
SinI GGWCC 2 cut(s) 37, 58
SnaBI TACGTA 1 cut(s) 419
Sse9I AATT 4 cut(s) 88, 235, 364, 405
SspMI CTAG 4 cut(s) 173, 206, 323, 392
StyD4I CCNGG 2 cut(s) 48, 60
TaaI ACNGT 3 cut(s) 215, 424, 543
TaiI ACGT 2 cut(s) 421, 516
TaqI TCGA 2 cut(s) 448, 505
TasI AATT 4 cut(s) 88, 235, 364, 405
TatI WGTACW 1 cut(s) 229
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 2 cut(s) 157, 165
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 3 cut(s) 176, 293, 428
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 1 cut(s) 541
TspRI CASTG 2 cut(s) 157, 165
Tth111I GACNNNGTC 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 37, 58
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 2 cut(s) 88, 235
XspI CTAG 4 cut(s) 173, 206, 323, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.