Rh6DG432900

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0025063
Physical Location & Seq
Forward (+)
61190788 .. 61191627
840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG432900.1

Sequence Viewer

Length: 498 bp
ATGGAAGCCCCTCTCTTTTCCCTTGGAATAACTCACATCTTGTCTGCATTTTATTCTCCAACTGGTTCTGAAATCAAACACGAAGTTGACAAGGTAACTCTCATGTTTGTTGCACTAGCCGGTGTTACTGTTCCAGTATATCTGTTGCAGCACTACTTCTACACATTGATGGGGGAGTGGCTCACAAGTCGTGTGCGCCTATTAATGTTCTCAGCTATACTTTCAAACGAAGTTGGGTGGTTTGATTTGGATGAGAATAACACTGGTTCACTGACATCAATCCTAGCTGCCAATGCAAAATTAGTCCGAAGTGCTCTAGCTGACCGTCTATCAACAATAGTACAGAATTTATCACTCATAGCAACTGCATTTGTTATTTCCTTAACATTAAGTTGGCGTATTGCAGCTGTTGTGGTTGCTACCCTCCCCCTGCTAGTTGGAGCTTCCATTACTAAGGTCAGTGTCAAATATCAGTCCAAACATTTTCCATTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

165

Amino Acids

18.06

Weight (kDa)

8.04

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 4 - 150 8.5e-25 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025063)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303221
rosa_samantha Rh6AG433800 Rh6DG432900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 346
AfaI GTAC 1 cut(s) 342
AgsI TTSAA 1 cut(s) 225
AluBI AGCT 5 cut(s) 215, 287, 320, 407, 443
AluI AGCT 5 cut(s) 215, 287, 320, 407, 443
Alw21I GWGCWC 1 cut(s) 316
ApeKI GCWGC 3 cut(s) 148, 287, 404
ApoI RAATTY 1 cut(s) 346
AseI ATTAAT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 160, 274, 416
BccI CCATC 1 cut(s) 163
BfaI CTAG 4 cut(s) 116, 284, 317, 434
BisI GCNGC 3 cut(s) 149, 288, 405
BlsI GCNGC 3 cut(s) 150, 289, 406
BsaJI CCNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 67, 134, 268
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 3 cut(s) 67, 134, 268
BseXI GCAGC 3 cut(s) 160, 274, 416
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 3 cut(s) 67, 134, 268
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 130, 326
BstDEI CTNAG 2 cut(s) 211, 453
BstF5I GGATG 1 cut(s) 256
BstHHI GCGC 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstV1I GCAGC 3 cut(s) 160, 274, 416
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 3 cut(s) 261, 269, 466
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 119
Csp6I GTAC 1 cut(s) 341
CviAII CATG 1 cut(s) 103
CviJI RGCY 8 cut(s) 8, 119, 181, 215, 287, 320, 407, 443
CviKI_1 RGCY 8 cut(s) 8, 119, 181, 215, 287, 320, 407, 443
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 211, 453
Eco130I CCWWGG 1 cut(s) 22
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 106
FaiI YATR 5 cut(s) 104, 139, 218, 359, 496
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 149, 288, 405
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 149, 288, 405
FspBI CTAG 4 cut(s) 116, 284, 317, 434
GlaI GCGC 1 cut(s) 197
GluI GCNGC 3 cut(s) 149, 288, 405
HapII CCGG 1 cut(s) 120
HhaI GCGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 106
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HpaII CCGG 1 cut(s) 120
Hpy166II GTNNAC 2 cut(s) 88, 269
Hpy188I TCNGA 2 cut(s) 70, 308
Hpy8I GTNNAC 2 cut(s) 88, 269
HpyCH4III ACNGT 2 cut(s) 130, 326
HpyCH4V TGCA 7 cut(s) 47, 113, 148, 296, 368, 404, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 2 cut(s) 211, 453
Hsp92II CATG 1 cut(s) 106
HspAI GCGC 1 cut(s) 196
LmnI GCTCC 1 cut(s) 440
LpnPI CCDG 5 cut(s) 48, 133, 147, 249, 443
Lsp1109I GCAGC 3 cut(s) 160, 274, 416
MaeI CTAG 4 cut(s) 116, 284, 317, 434
MaeIII GTNAC 2 cut(s) 94, 124
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 2 cut(s) 299, 346
MmeI TCCRAC 2 cut(s) 83, 418
MnlI CCTC 2 cut(s) 21, 434
MseI TTAA 3 cut(s) 203, 383, 389
MslI CAYNNNNRTG 1 cut(s) 167
MspA1I CMGCKG 1 cut(s) 407
MspI CCGG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 293
NlaIII CATG 1 cut(s) 106
PkrI GCNGC 3 cut(s) 150, 289, 406
PshBI ATTAAT 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 407
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 3 cut(s) 203, 383, 389
SatI GCNGC 3 cut(s) 149, 288, 405
SduI GDGCHC 1 cut(s) 316
SetI ASST 7 cut(s) 96, 217, 289, 322, 409, 445, 459
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 2 cut(s) 299, 346
SspMI CTAG 4 cut(s) 116, 284, 317, 434
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 130, 326
TasI AATT 2 cut(s) 299, 346
TatI WGTACW 1 cut(s) 340
Tru1I TTAA 3 cut(s) 203, 383, 389
Tru9I TTAA 3 cut(s) 203, 383, 389
TscAI CASTG 3 cut(s) 268, 276, 466
TseI GCWGC 3 cut(s) 148, 287, 404
TspRI CASTG 3 cut(s) 268, 276, 466
VspI ATTAAT 1 cut(s) 203
XapI RAATTY 1 cut(s) 346
XspI CTAG 4 cut(s) 116, 284, 317, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.