Rh6AG433800

ABC transporter B family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0025063
Physical Location & Seq
Forward (+)
62393678 .. 62399536
5859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG433800.1

Sequence Viewer

Length: 1047 bp
ATGCACATTCTTTTATTCAAGGTTTACCTGATGGCTACAACACTTGGGCTGGAGAGAATAGCTATTGCAAGAGCAGTTCTAAGAAACCCGAAAATATTACTCTTGGATGAGGCCACAAGTGCTCTTGCTGCAGAATCAGAACAAATTGTTCAACAAGCACTGGATAAAATTATGTCACATAGAACTACAATCATTGTTGCTCACCGGCTTTCCACTATCCGCGATGTGGATACAATCATTGTGCTGAAGAATGGTCAGGTTGTTGAGAGTGGCAACCATGCAGAACTGATGTGTAAGAAAGTTGGTGCAGCTCTGGAAGGAACGGAAGCCCCTTTCTTTGCCCTTGCAATAACTCACATCTTGTCTACATTTTATTCTCCAACTGGTTCTGAAATCAAACACGAAGTTGACAAGGTAACTCTCACGTTTGTTGCACTAGCCGGTGTTACTGTTCCAGTATATCCGTTGCAGCACTACTTCTACACATTGATGGGGGAGCGGCTCACAAGTCATGTGCGCCTATTAATGTTCTCAGCTATACTTTCAAACGAAGTTGGGTGGTTTGATTTAGATGAGAATAACACTGGTTCACTGACATCAATCCTAGCTGCCAATGCAACATTAGTCCGAAGTGCTCTAGCTGACCGTCTATCAACAATAGTACAGAATTTATCACTCATAGCAACTGCATTTGTTATTTCCTTCACATTAAGTTGGCGTATTGCAGCTGTTGTGGTTGCTACCCTCCCCCTGCTAGTTGGAGCTTCCATTACTGAGGGATTTGGAGGAGACTACAATTGTGCTTATGCTAAAGCAACTTCCCTAGCTCGTGAAGCAATTGCCAACATACGTACTGTTGCTGCATTTGGGGCTGAGGATCGAATATCACTTCAGTTTGCATCAGAGCTAAACCATCCAAATAAGAAAGCAGTTCTTCGAGGTCACGTTTCCGGTTTTTTCTATGGCCTATCACAGTTTTTTTTCATTCTGTTCCTATGCACTCGGCCTTTGGTTTGCATTAGTTCTAATCAAGCACAAAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

348

Amino Acids

37.92

Weight (kDa)

7.75

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane PF00664 106 - 331 8e-39 ABC transporter transmembrane region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025063)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0303221
rosa_samantha Rh6AG433800 Rh6DG432900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 499
AccI GTMKAC 1 cut(s) 365
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 220, 499
AclWI GGATC 1 cut(s) 885
AcsI RAATTY 1 cut(s) 667
AcuI CTGAAG 2 cut(s) 266, 875
AfaI GTAC 2 cut(s) 663, 853
AfiI CCNNNNNNNGG 1 cut(s) 226
AgsI TTSAA 3 cut(s) 19, 152, 546
AluBI AGCT 9 cut(s) 62, 311, 536, 608, 641, 728, 764, 827, 907
AluI AGCT 9 cut(s) 62, 311, 536, 608, 641, 728, 764, 827, 907
Alw21I GWGCWC 2 cut(s) 124, 637
Alw26I GTCTC 1 cut(s) 783
AlwI GGATC 1 cut(s) 885
AoxI GGCC 3 cut(s) 111, 964, 1004
ApeKI GCWGC 6 cut(s) 128, 308, 469, 608, 725, 860
ApoI RAATTY 1 cut(s) 667
AseI ATTAAT 1 cut(s) 524
AspLEI GCGC 1 cut(s) 519
AsuHPI GGTGA 1 cut(s) 194
BauI CACGAG 1 cut(s) 828
Bbv12I GWGCWC 2 cut(s) 124, 637
BbvCI CCTCAGC 1 cut(s) 873
BbvI GCAGC 6 cut(s) 115, 320, 481, 595, 737, 847
BccI CCATC 3 cut(s) 25, 484, 921
BciVI GTATCC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 783
BfaI CTAG 5 cut(s) 437, 605, 638, 755, 824
BfmI CTRYAG 1 cut(s) 129
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 7 cut(s) 129, 309, 470, 500, 609, 726, 861
BlsI GCNGC 7 cut(s) 130, 310, 471, 501, 610, 727, 862
BmsI GCATC 1 cut(s) 908
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 873
BsaAI YACGTR 1 cut(s) 851
BsaWI WCCGGW 1 cut(s) 950
Bsc4I CCNNNNNNNGG 1 cut(s) 226
Bse118I RCCGGY 2 cut(s) 204, 440
Bse1I ACTGG 4 cut(s) 165, 388, 455, 589
BseGI GGATG 2 cut(s) 112, 913
BseLI CCNNNNNNNGG 1 cut(s) 226
BseMII CTCAG 3 cut(s) 546, 765, 864
BseNI ACTGG 4 cut(s) 165, 388, 455, 589
BseRI GAGGAG 1 cut(s) 801
BseXI GCAGC 6 cut(s) 115, 320, 481, 595, 737, 847
BsgI GTGCAG 1 cut(s) 327
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 3 cut(s) 113, 966, 1006
BsiHKAI GWGCWC 2 cut(s) 124, 637
BsiSI CCGG 3 cut(s) 205, 441, 951
BslI CCNNNNNNNGG 1 cut(s) 226
BsmAI GTCTC 1 cut(s) 783
BsnI GGCC 3 cut(s) 113, 966, 1006
Bsp1286I GDGCHC 2 cut(s) 124, 637
Bsp143I GATC 1 cut(s) 877
BspACI CCGC 2 cut(s) 220, 499
BspANI GGCC 3 cut(s) 113, 966, 1006
BspCNI CTCAG 3 cut(s) 545, 766, 865
BspFNI CGCG 1 cut(s) 222
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 1 cut(s) 885
BsrBI CCGCTC 1 cut(s) 499
BsrFI RCCGGY 2 cut(s) 204, 440
BsrI ACTGG 4 cut(s) 165, 388, 455, 589
BssAI RCCGGY 2 cut(s) 204, 440
BssMI GATC 1 cut(s) 877
BssSI CACGAG 1 cut(s) 828
Bst2BI CACGAG 1 cut(s) 828
Bst4CI ACNGT 4 cut(s) 451, 647, 856, 975
BstBAI YACGTR 1 cut(s) 851
BstDEI CTNAG 4 cut(s) 80, 532, 774, 873
BstF5I GGATG 2 cut(s) 112, 913
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 1 cut(s) 880
BstMAI GTCTC 1 cut(s) 783
BstMBI GATC 1 cut(s) 877
BstMWI GCNNNNNNNGC 5 cut(s) 119, 128, 614, 833, 869
BstSFI CTRYAG 1 cut(s) 129
BstSNI TACGTA 1 cut(s) 851
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 6 cut(s) 115, 320, 481, 595, 737, 847
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 3 cut(s) 113, 966, 1006
BtgZI GCGATG 1 cut(s) 237
BtsCI GGATG 2 cut(s) 112, 913
BtsIMutI CAGTG 3 cut(s) 158, 582, 590
CfoI GCGC 1 cut(s) 519
Cfr10I RCCGGY 2 cut(s) 204, 440
Csp6I GTAC 2 cut(s) 662, 852
CviAII CATG 2 cut(s) 278, 512
CviQI GTAC 2 cut(s) 662, 852
DdeI CTNAG 4 cut(s) 80, 532, 774, 873
DpnI GATC 1 cut(s) 879
DpnII GATC 1 cut(s) 877
Eco105I TACGTA 1 cut(s) 851
Eco57I CTGAAG 2 cut(s) 266, 875
FaeI CATG 2 cut(s) 281, 515
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FatI CATG 2 cut(s) 277, 511
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 7 cut(s) 129, 309, 470, 500, 609, 726, 861
FokI GGATG 2 cut(s) 119, 900
Fsp4HI GCNGC 7 cut(s) 129, 309, 470, 500, 609, 726, 861
FspBI CTAG 5 cut(s) 437, 605, 638, 755, 824
GlaI GCGC 1 cut(s) 518
GluI GCNGC 7 cut(s) 129, 309, 470, 500, 609, 726, 861
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 3 cut(s) 113, 966, 1006
HapII CCGG 3 cut(s) 205, 441, 951
HhaI GCGC 1 cut(s) 519
Hin1II CATG 2 cut(s) 281, 515
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 1 cut(s) 134
HpaII CCGG 3 cut(s) 205, 441, 951
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 4 cut(s) 25, 366, 409, 590
Hpy188I TCNGA 4 cut(s) 139, 391, 629, 904
Hpy188III TCNNGA 2 cut(s) 314, 830
Hpy8I GTNNAC 4 cut(s) 25, 366, 409, 590
HpyAV CCTTC 2 cut(s) 311, 712
HpyCH4III ACNGT 4 cut(s) 451, 647, 856, 975
HpyCH4IV ACGT 3 cut(s) 425, 850, 945
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 128, 614, 833, 869
HpyF3I CTNAG 4 cut(s) 80, 532, 774, 873
HpySE526I ACGT 3 cut(s) 425, 850, 945
Hsp92II CATG 2 cut(s) 281, 515
HspAI GCGC 1 cut(s) 517
Kzo9I GATC 1 cut(s) 877
LmnI GCTCC 2 cut(s) 496, 761
Lsp1109I GCAGC 6 cut(s) 115, 320, 481, 595, 737, 847
LweI GCATC 1 cut(s) 908
MaeI CTAG 5 cut(s) 437, 605, 638, 755, 824
MaeII ACGT 3 cut(s) 425, 850, 945
MaeIII GTNAC 4 cut(s) 174, 415, 445, 941
MalI GATC 1 cut(s) 879
MbiI CCGCTC 1 cut(s) 499
MboI GATC 1 cut(s) 877
MboII GAAGA 2 cut(s) 259, 926
MfeI CAATTG 2 cut(s) 796, 837
MhlI GDGCHC 2 cut(s) 124, 637
MluCI AATT 5 cut(s) 144, 168, 667, 796, 837
MmeI TCCRAC 2 cut(s) 404, 739
MnlI CCTC 6 cut(s) 103, 755, 769, 779, 868, 932
MseI TTAA 2 cut(s) 524, 710
MslI CAYNNNNRTG 1 cut(s) 488
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 3 cut(s) 205, 441, 951
MunI CAATTG 2 cut(s) 796, 837
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 5 cut(s) 119, 128, 614, 833, 869
NdeII GATC 1 cut(s) 877
NlaIII CATG 2 cut(s) 281, 515
NmeAIII GCCGAG 1 cut(s) 982
NmuCI GTSAC 2 cut(s) 174, 941
PfeI GAWTC 1 cut(s) 134
PkrI GCNGC 7 cut(s) 130, 310, 471, 501, 610, 727, 862
Ppu21I YACGTR 1 cut(s) 851
PshBI ATTAAT 1 cut(s) 524
PstI CTGCAG 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 2 cut(s) 663, 853
RsaNI GTAC 2 cut(s) 662, 852
RseI CAYNNNNRTG 1 cut(s) 488
SaqAI TTAA 2 cut(s) 524, 710
SatI GCNGC 7 cut(s) 129, 309, 470, 500, 609, 726, 861
Sau3AI GATC 1 cut(s) 877
SduI GDGCHC 2 cut(s) 124, 637
SfaNI GCATC 1 cut(s) 908
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 488
SnaBI TACGTA 1 cut(s) 851
Sse9I AATT 5 cut(s) 144, 168, 667, 796, 837
SsiI CCGC 2 cut(s) 220, 499
SspI AATATT 1 cut(s) 96
SspMI CTAG 5 cut(s) 437, 605, 638, 755, 824
TaaI ACNGT 4 cut(s) 451, 647, 856, 975
TaiI ACGT 3 cut(s) 428, 853, 948
TaqI TCGA 2 cut(s) 880, 937
TasI AATT 5 cut(s) 144, 168, 667, 796, 837
TatI WGTACW 1 cut(s) 661
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 2 cut(s) 524, 710
Tru9I TTAA 2 cut(s) 524, 710
TscAI CASTG 3 cut(s) 165, 589, 597
TseFI GTSAC 2 cut(s) 174, 941
TseI GCWGC 6 cut(s) 128, 308, 469, 608, 725, 860
Tsp45I GTSAC 2 cut(s) 174, 941
TspDTI ATGAA 1 cut(s) 973
TspGWI ACGGA 2 cut(s) 338, 453
TspRI CASTG 3 cut(s) 165, 589, 597
VspI ATTAAT 1 cut(s) 524
XapI RAATTY 1 cut(s) 667
XmiI GTMKAC 1 cut(s) 365
XspI CTAG 5 cut(s) 437, 605, 638, 755, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.