RchiOBHm_Chr6g0306651

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025055
Physical Location & Seq
Forward (+)
65289776 .. 65291479
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 729 bp
ATGGCATTGAGTGAGGTTAAGGCTGAATTTCAACATGACTTATCTGAATCTGATTTGAACAATCCTGCAAAAAACGTGGAAGCTGGAGAAGAACTGCTGGTGGATGATGATGGCAAACTCAAAAGAACTGTAATCAATTGCTTTAATTTGTGTGATCATGCGGGAACAGTATGGACTGCCAGTGCCCATATAATCACAACATCAATAGGTGCAGGGGTGCTATCTCTAGCCTGGGCAATGGCCCAACTCGGATGGCTTGCCCGGGTTTTTATTCTCTTGTTCTGCACCTTCACTGCTGGCTACGCTTCCACTCTCTTAGCAGATTGTTACAGATATCCAGACCCAGTTTCAAGCAAGAGAAACTGCTCTTATATGGAGACTGTCAAAGTCTATTTAGGTGGAACAATGCACATGATTTGTGGATGGATTTTATATTTAGACCTTGCTGCCATTGGAGTTGGCTTCACTATAACCACTGCAAATAGCTTGGTGGCTATACAGAAGTCCAATTGTCATCGCAAAAATGGTGAAGATTCTCCATGCATGTTTTCCTATATTCCACACATGGTTGGATTTGGGCTTGTTGAAATTCTATCACAACTCGAAAACTTTCACAAATTGACTTGGCTCTCTAAGCTTGCAGCTATTATGTCATTTGTCTATGCAACTATTGGAATTGGACTTTCTCTTGCTAAGATCATATCAGGCAAGTTCTCATCCATAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

242

Amino Acids

26.41

Weight (kDa)

6.14

Isoelectric Point (pI)

33.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 54 - 234 1e-39 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025055)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0306651
rosa_laevigata RLG00000010776
rosa_samantha Rh6AG463700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AcsI RAATTY 2 cut(s) 26, 588
AgsI TTSAA 4 cut(s) 32, 58, 351, 587
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 4 cut(s) 83, 486, 637, 644
AluI AGCT 4 cut(s) 83, 486, 637, 644
Alw26I GTCTC 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 2 cut(s) 446, 641
ApoI RAATTY 2 cut(s) 26, 588
Asp700I GAANNNNTTC 1 cut(s) 609
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 2 cut(s) 262, 263
AsuHPI GGTGA 1 cut(s) 539
AvaI CYCGRG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 433, 653
BccI CCATC 3 cut(s) 104, 246, 417
BciT130I CCWGG 1 cut(s) 232
BclI TGATCA 1 cut(s) 154
BcnI CCSGG 2 cut(s) 262, 263
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 227
BisI GCNGC 2 cut(s) 447, 642
BlsI GCNGC 2 cut(s) 448, 643
Bme1390I CCNGG 3 cut(s) 232, 262, 263
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 232, 262, 263
BmrI ACTGGG 1 cut(s) 338
BmuI ACTGGG 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 262, 263
BsaJI CCNNGG 2 cut(s) 231, 261
Bse1I ACTGG 2 cut(s) 180, 344
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 231, 261
BseGI GGATG 4 cut(s) 109, 257, 428, 716
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 2 cut(s) 180, 344
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 2 cut(s) 433, 653
BsgI GTGCAG 2 cut(s) 231, 268
BshFI GGCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 154, 696
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 2 cut(s) 180, 344
BssECI CCNNGG 2 cut(s) 231, 261
BssMI GATC 2 cut(s) 154, 696
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 130, 169, 382
BstC8I GCNNGC 3 cut(s) 258, 298, 639
BstDEI CTNAG 3 cut(s) 316, 633, 693
BstF5I GGATG 4 cut(s) 109, 257, 428, 716
BstKTI GATC 2 cut(s) 157, 699
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 154, 696
BstMWI GCNNNNNNNGC 2 cut(s) 302, 634
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 3 cut(s) 230, 260, 261
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 433, 653
BsuRI GGCC 1 cut(s) 242
BtgZI GCGATG 1 cut(s) 500
BtsCI GGATG 4 cut(s) 109, 257, 428, 716
BtsI GCAGTG 2 cut(s) 291, 474
BtsIMutI CAGTG 3 cut(s) 187, 291, 474
Cac8I GCNNGC 3 cut(s) 258, 298, 639
Cfr13I GGNCC 1 cut(s) 241
Cfr9I CCCGGG 1 cut(s) 261
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 6 cut(s) 35, 158, 412, 540, 544, 565
DdeI CTNAG 3 cut(s) 316, 633, 693
DpnI GATC 2 cut(s) 156, 698
DpnII GATC 2 cut(s) 154, 696
Eco32I GATATC 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 1 cut(s) 335
EcoT22I ATGCAT 1 cut(s) 545
FaeI CATG 6 cut(s) 38, 161, 415, 543, 547, 568
FatI CATG 6 cut(s) 34, 157, 411, 539, 543, 564
FauI CCCGC 1 cut(s) 154
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 447, 642
FokI GGATG 4 cut(s) 116, 264, 435, 703
Fsp4HI GCNGC 2 cut(s) 447, 642
FspBI CTAG 1 cut(s) 227
GluI GCNGC 2 cut(s) 447, 642
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 262
Hin1II CATG 6 cut(s) 38, 161, 415, 543, 547, 568
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 2 cut(s) 47, 533
HpaII CCGG 1 cut(s) 262
HphI GGTGA 1 cut(s) 539
Hpy188I TCNGA 3 cut(s) 46, 52, 251
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 130, 169, 382
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 8 cut(s) 68, 212, 285, 409, 479, 543, 641, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 634
HpyF3I CTNAG 3 cut(s) 316, 633, 693
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 6 cut(s) 38, 161, 415, 543, 547, 568
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 2 cut(s) 154, 696
Lsp1109I GCAGC 2 cut(s) 433, 653
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 326
MalI GATC 2 cut(s) 156, 698
MboI GATC 2 cut(s) 154, 696
MboII GAAGA 2 cut(s) 101, 542
MfeI CAATTG 2 cut(s) 136, 508
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 7 cut(s) 26, 136, 145, 508, 588, 617, 675
MmeI TCCRAC 1 cut(s) 550
MnlI CCTC 1 cut(s) 7
Mph1103I ATGCAT 1 cut(s) 545
MroXI GAANNNNTTC 1 cut(s) 609
MseI TTAA 3 cut(s) 18, 144, 727
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 3 cut(s) 232, 262, 263
MunI CAATTG 2 cut(s) 136, 508
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 302, 634
NciI CCSGG 2 cut(s) 262, 263
NdeII GATC 2 cut(s) 154, 696
NlaIII CATG 6 cut(s) 38, 161, 415, 543, 547, 568
NsiI ATGCAT 1 cut(s) 545
NspI RCATGY 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 2 cut(s) 47, 533
PkrI GCNGC 2 cut(s) 448, 643
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspPI GGNCC 1 cut(s) 241
SaqAI TTAA 3 cut(s) 18, 144, 727
SatI GCNGC 2 cut(s) 447, 642
Sau3AI GATC 2 cut(s) 154, 696
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 232, 262, 263
SduI GDGCHC 1 cut(s) 187
SmaI CCCGGG 1 cut(s) 263
Sse9I AATT 7 cut(s) 26, 136, 145, 508, 588, 617, 675
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 3 cut(s) 230, 260, 261
TaaI ACNGT 3 cut(s) 130, 169, 382
TaiI ACGT 1 cut(s) 78
TaqI TCGA 1 cut(s) 603
TasI AATT 7 cut(s) 26, 136, 145, 508, 588, 617, 675
TfiI GAWTC 2 cut(s) 47, 533
Tru1I TTAA 3 cut(s) 18, 144, 727
Tru9I TTAA 3 cut(s) 18, 144, 727
TscAI CASTG 3 cut(s) 187, 298, 481
TseI GCWGC 2 cut(s) 446, 641
TspMI CCCGGG 1 cut(s) 261
TspRI CASTG 3 cut(s) 187, 298, 481
XapI RAATTY 2 cut(s) 26, 588
XceI RCATGY 1 cut(s) 547
XmaI CCCGGG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.