Rh6AG463700

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0025055
Physical Location & Seq
Forward (+)
64651735 .. 64653105
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG463700.1

Sequence Viewer

Length: 495 bp
ATGGCATTGAGTGAGGTTAAGGCTGAATTTCAACATGACTTATCTGAATCTGATTTGAACAATCCTGCAAAAAACGTGGAAGCTGGAGAAGAACTGCTGGTGGATGATGATGGCAAACTCAAAAGAACTGTAATCAATTGCTTTAATTTGTGTGATCATGCGGGAACAGTATGGACTGCCAGTGCCCATATAATCACAACATCAATAGGTGCAGGGGTGCTATCTCTAGCCTGGGCAATGGCCCAACTCGGATGGCTTGCCCGGGTTTTTATTCTCTTGTTCTGCACCTTCACTGCTGGCTACGCTTCCACTCTCTTAGCAGATTGTTACAGATATCCAGACCCAGTTTCAAGCAAGAGAAACTGCTCTTATATGGAGACTGTCAAAGTCTATTTAGGTGGAACAATGCACATGATTTGTGGATGGATTTTATATTTAGACCTTGCTGCCATTGGAGTTGGCTTCACTATAACCACTGCAAATAGCTTGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

164

Amino Acids

17.84

Weight (kDa)

5.02

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 54 - 163 4.9e-27 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025055)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0306651
rosa_laevigata RLG00000010776
rosa_samantha Rh6AG463700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 161
AcsI RAATTY 1 cut(s) 26
AgsI TTSAA 3 cut(s) 32, 58, 351
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 2 cut(s) 83, 486
AluI AGCT 2 cut(s) 83, 486
Alw26I GTCTC 1 cut(s) 371
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 446
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 2 cut(s) 262, 263
AvaI CYCGRG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 433
BccI CCATC 3 cut(s) 104, 246, 417
BciT130I CCWGG 1 cut(s) 232
BclI TGATCA 1 cut(s) 154
BcnI CCSGG 2 cut(s) 262, 263
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 447
BlsI GCNGC 1 cut(s) 448
Bme1390I CCNGG 3 cut(s) 232, 262, 263
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 232, 262, 263
BmrI ACTGGG 1 cut(s) 338
BmuI ACTGGG 1 cut(s) 338
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 2 cut(s) 262, 263
BsaJI CCNNGG 2 cut(s) 231, 261
Bse1I ACTGG 2 cut(s) 180, 344
Bse3DI GCAATG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 231, 261
BseGI GGATG 3 cut(s) 109, 257, 428
BseMI GCAATG 1 cut(s) 243
BseNI ACTGG 2 cut(s) 180, 344
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 1 cut(s) 433
BsgI GTGCAG 2 cut(s) 231, 268
BshFI GGCC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 262
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 243
BsrI ACTGG 2 cut(s) 180, 344
BssECI CCNNGG 2 cut(s) 231, 261
BssMI GATC 1 cut(s) 154
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 130, 169, 382
BstC8I GCNNGC 2 cut(s) 258, 298
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 3 cut(s) 109, 257, 428
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 302
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 3 cut(s) 230, 260, 261
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 433
BsuRI GGCC 1 cut(s) 242
BtsCI GGATG 3 cut(s) 109, 257, 428
BtsI GCAGTG 2 cut(s) 291, 474
BtsIMutI CAGTG 3 cut(s) 187, 291, 474
Cac8I GCNNGC 2 cut(s) 258, 298
Cfr13I GGNCC 1 cut(s) 241
Cfr9I CCCGGG 1 cut(s) 261
CspCI CAANNNNNGTGG 2 cut(s) 57, 92
CviAII CATG 3 cut(s) 35, 158, 412
CviJI RGCY 8 cut(s) 23, 83, 230, 242, 256, 300, 462, 486
CviKI_1 RGCY 8 cut(s) 23, 83, 230, 242, 256, 300, 462, 486
DdeI CTNAG 1 cut(s) 316
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco32I GATATC 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 1 cut(s) 335
FaeI CATG 3 cut(s) 38, 161, 415
FatI CATG 3 cut(s) 34, 157, 411
FauI CCCGC 1 cut(s) 154
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 1 cut(s) 447
FokI GGATG 3 cut(s) 116, 264, 435
Fsp4HI GCNGC 1 cut(s) 447
FspBI CTAG 1 cut(s) 227
GluI GCNGC 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 242
HapII CCGG 1 cut(s) 262
Hin1II CATG 3 cut(s) 38, 161, 415
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 46, 52, 251
Hpy188III TCNNGA 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 3 cut(s) 130, 169, 382
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 68, 212, 285, 409, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 302
HpyF3I CTNAG 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 3 cut(s) 38, 161, 415
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 154
Lsp1109I GCAGC 1 cut(s) 433
MaeI CTAG 1 cut(s) 227
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 326
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 187
MluCI AATT 3 cut(s) 26, 136, 145
MnlI CCTC 1 cut(s) 7
MseI TTAA 2 cut(s) 18, 144
MspI CCGG 1 cut(s) 262
MspR9I CCNGG 3 cut(s) 232, 262, 263
MunI CAATTG 1 cut(s) 136
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 302
NciI CCSGG 2 cut(s) 262, 263
NdeII GATC 1 cut(s) 154
NlaIII CATG 3 cut(s) 38, 161, 415
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspPI GGNCC 1 cut(s) 241
SaqAI TTAA 2 cut(s) 18, 144
SatI GCNGC 1 cut(s) 447
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 3 cut(s) 232, 262, 263
SduI GDGCHC 1 cut(s) 187
SetI ASST 8 cut(s) 18, 78, 85, 211, 290, 400, 444, 488
SmaI CCCGGG 1 cut(s) 263
Sse9I AATT 3 cut(s) 26, 136, 145
SsiI CCGC 1 cut(s) 161
SspMI CTAG 1 cut(s) 227
StyD4I CCNGG 3 cut(s) 230, 260, 261
TaaI ACNGT 3 cut(s) 130, 169, 382
TaiI ACGT 1 cut(s) 78
TasI AATT 3 cut(s) 26, 136, 145
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 18, 144
Tru9I TTAA 2 cut(s) 18, 144
TscAI CASTG 3 cut(s) 187, 298, 481
TseI GCWGC 1 cut(s) 446
TspMI CCCGGG 1 cut(s) 261
TspRI CASTG 3 cut(s) 187, 298, 481
XapI RAATTY 1 cut(s) 26
XmaI CCCGGG 1 cut(s) 261
XspI CTAG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.