RLG00000010776

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0025055
Physical Location & Seq
Reverse (-)
4257020 .. 4270094
13075 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010776

Sequence Viewer

Length: 747 bp
ATGGCGTTGAGTGAGGTTAAGGCTGAATTTCAACATGACTTATCTGAATCTGGTTTGAACAATCCTGCGAAAAACGTGGAAGCTGGAGTAGAACTGCTGTGGGATGATGATGGCAAACTCAAAAGAACTGCCCAACTCGGATGGCTTGCCGGGGTTTTTATTCTCTCGTTCTGCACCTTCACTGCTGGCTACGCTTCCACTCTCTTAGCAGATTGTTACAGATATCCAGACCCAGTTTCAGGCAAGAGAAACTGCTCTTATATGGAGACTGTCAAAGTCTATTTAGGTGGAACGATGCACATGATTTGTGGATGGATTTTATATTTAGACCTTGCTGCCATTGGAGTTGGCTTCACTATAACCACTGCAAATAGCTTGGTGGCTATACAGAAGTCCAATTGTCATCGCAAAAATGGTGAAGATTCTCCATGCATGTTTTCCTATGTTCCACACATGGTTGGATTTGGGCTTGTTGAAATTCTCTTATCACAACTCCAAAACTTTGACAAATTGACTTGGCTCTCTAAGCTTGCAGCTATTATGTCATTTGTCTATGAACAACCTTTCTGGCAGGGGGGGGATCAGTCGTCATCGGAAAAAATTTGGATGATGCTTATAGCAGTGGGAGATATTGCATTGGCTTGCTCGTATGCTCTTGTCCTGTTTGAGATCCAAGACACACTGAAGTCATCGCCACCAGAAAACAAAGTGATGAAGAGGGCTGTTGTGATAGGGGTTCAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

249

Amino Acids

27.39

Weight (kDa)

5.38

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 44 - 245 1.8e-37 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025055)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0306651
rosa_laevigata RLG00000010776
rosa_samantha Rh6AG463700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 588, 664
AcsI RAATTY 3 cut(s) 26, 477, 600
AcuI CTGAAG 1 cut(s) 704
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 4 cut(s) 32, 58, 476, 740
AluBI AGCT 4 cut(s) 83, 375, 529, 536
AluI AGCT 4 cut(s) 83, 375, 529, 536
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 588, 664
ApeKI GCWGC 2 cut(s) 335, 533
ApoI RAATTY 3 cut(s) 26, 477, 600
AsuC2I CCSGG 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 428
BbvI GCAGC 2 cut(s) 322, 545
BccI CCATC 3 cut(s) 104, 135, 306
BcnI CCSGG 1 cut(s) 151
BcoDI GTCTC 1 cut(s) 260
BisI GCNGC 2 cut(s) 336, 534
BlsI GCNGC 2 cut(s) 337, 535
Bme1390I CCNGG 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 151
BmrI ACTGGG 1 cut(s) 227
BmsI GCATC 2 cut(s) 285, 600
BmuI ACTGGG 1 cut(s) 227
BpmI CTGGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 233
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 4 cut(s) 109, 146, 317, 612
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 322, 545
BsgI GTGCAG 1 cut(s) 157
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 580, 669
BspPI GGATC 2 cut(s) 588, 664
BsrI ACTGG 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 580, 669
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 1 cut(s) 710
BstC8I GCNNGC 4 cut(s) 147, 187, 531, 643
BstDEI CTNAG 2 cut(s) 205, 525
BstF5I GGATG 4 cut(s) 109, 146, 317, 612
BstKTI GATC 2 cut(s) 583, 672
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 2 cut(s) 580, 669
BstMWI GCNNNNNNNGC 2 cut(s) 191, 526
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 322, 545
BstX2I RGATCY 1 cut(s) 669
BstYI RGATCY 1 cut(s) 669
BtgZI GCGATG 2 cut(s) 389, 675
BtsCI GGATG 4 cut(s) 109, 146, 317, 612
BtsI GCAGTG 3 cut(s) 180, 363, 627
BtsIMutI CAGTG 4 cut(s) 180, 363, 627, 680
Cac8I GCNNGC 4 cut(s) 147, 187, 531, 643
CviAII CATG 5 cut(s) 35, 301, 429, 433, 454
DdeI CTNAG 2 cut(s) 205, 525
DpnI GATC 2 cut(s) 582, 671
DpnII GATC 2 cut(s) 580, 669
Eam1104I CTCTTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 710
Eco32I GATATC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 704
EcoRV GATATC 1 cut(s) 224
EcoT22I ATGCAT 1 cut(s) 434
FaeI CATG 5 cut(s) 38, 304, 432, 436, 457
FatI CATG 5 cut(s) 34, 300, 428, 432, 453
Fnu4HI GCNGC 2 cut(s) 336, 534
FokI GGATG 4 cut(s) 116, 153, 324, 619
Fsp4HI GCNGC 2 cut(s) 336, 534
GluI GCNGC 2 cut(s) 336, 534
GsuI CTGGAG 1 cut(s) 105
HapII CCGG 1 cut(s) 150
Hin1II CATG 5 cut(s) 38, 304, 432, 436, 457
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 2 cut(s) 47, 422
HpaII CCGG 1 cut(s) 150
HphI GGTGA 1 cut(s) 428
Hpy188I TCNGA 3 cut(s) 46, 140, 595
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 6 cut(s) 174, 298, 368, 432, 533, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 526
HpyF3I CTNAG 2 cut(s) 205, 525
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 5 cut(s) 38, 304, 432, 436, 457
Kzo9I GATC 2 cut(s) 580, 669
Lsp1109I GCAGC 2 cut(s) 322, 545
LweI GCATC 2 cut(s) 285, 600
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 582, 671
MboI GATC 2 cut(s) 580, 669
MboII GAAGA 2 cut(s) 431, 727
MfeI CAATTG 1 cut(s) 397
MflI RGATCY 1 cut(s) 669
MluCI AATT 5 cut(s) 26, 397, 477, 509, 600
MmeI TCCRAC 1 cut(s) 439
MnlI CCTC 2 cut(s) 7, 711
Mph1103I ATGCAT 1 cut(s) 434
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 397
MwoI GCNNNNNNNGC 2 cut(s) 191, 526
NciI CCSGG 1 cut(s) 151
NdeII GATC 2 cut(s) 580, 669
NlaIII CATG 5 cut(s) 38, 304, 432, 436, 457
NsiI ATGCAT 1 cut(s) 434
NspI RCATGY 1 cut(s) 436
PfeI GAWTC 2 cut(s) 47, 422
PkrI GCNGC 2 cut(s) 337, 535
PsuI RGATCY 1 cut(s) 669
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 2 cut(s) 336, 534
Sau3AI GATC 2 cut(s) 580, 669
ScrFI CCNGG 1 cut(s) 151
SfaNI GCATC 2 cut(s) 285, 600
Sse9I AATT 5 cut(s) 26, 397, 477, 509, 600
StyD4I CCNGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 271
TaiI ACGT 1 cut(s) 78
TasI AATT 5 cut(s) 26, 397, 477, 509, 600
TfiI GAWTC 2 cut(s) 47, 422
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 4 cut(s) 187, 370, 627, 687
TseI GCWGC 2 cut(s) 335, 533
TspDTI ATGAA 2 cut(s) 570, 728
TspRI CASTG 4 cut(s) 187, 370, 627, 687
XapI RAATTY 3 cut(s) 26, 477, 600
XceI RCATGY 1 cut(s) 436
Zsp2I ATGCAT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.