RchiOBHm_Chr6g0306771

Oleosin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019674
Physical Location & Seq
Forward (+)
65341683 .. 65342099
417 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 417 bp
ATGGAGTCGTATCAGAAGCCGGAAGATTACTCGGCCCTATCCTCCGGCGAGATTTCTAGTACTGTCAAGTTTTTGTGCTGGACCGCAATTGGTATCACGCTGTATTTCTTCTCCGGGTTTACTCTAACTGGGACTTTGATGGCGCTGATCGTGGTTACCCCAGCTGTAGTGTTGTTTAGTCCGATTATGGTTCCGGCAGGGATATTCGTACTCCTAGTCGGAGCTGGTTTTGTGTCGTCGGTGGTGGGTGCAACATGGGGATTATCGTTGTTGTTTGAGTACGCGTCGAAGAAAAAGAATTGGACGCAGTTTTTATTTGATCTGGGGCGTAGGCTTGTGAGGAAGTACTTGCAAATGAGATTCGGGTGGATTGGTTGGTTATGGTCCTTGTGGGAGTGGGTTAAGTGGTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oleosin

Protein Analysis

138

Amino Acids

15.73

Weight (kDa)

9.37

Isoelectric Point (pI)

29.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oleosin PF01277 21 - 99 1.3e-17 Oleosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g35170
rosa_chinensis RchiOBHm_Chr6g0306771
rosa_multiflora Rmu_sc0042119.1_g000002 Rmu_sc0042162.1_g000001
rosa_roxburghii Rroxscaffold_7G00161470
rosa_rugosa Rorug06G0352700
rosa_samantha Rh6CG479000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 84
AfaI GTAC 4 cut(s) 61, 210, 281, 347
AflIII ACRYGT 1 cut(s) 282
AluBI AGCT 2 cut(s) 164, 224
AluI AGCT 2 cut(s) 164, 224
AoxI GGCC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 3 cut(s) 34, 81, 384
AsuC2I CCSGG 1 cut(s) 115
AvaII GGWCC 2 cut(s) 81, 384
BccI CCATC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 115
BfaI CTAG 2 cut(s) 57, 215
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 146
BmcAI AGTACT 2 cut(s) 61, 347
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 2 cut(s) 81, 384
BmgT120I GGNCC 3 cut(s) 34, 81, 384
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 115
BmrI ACTGGG 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 1 cut(s) 35
BsiSI CCGG 4 cut(s) 20, 45, 114, 194
BslFI GGGAC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 147, 319
BspACI CCGC 1 cut(s) 84
BspANI GGCC 1 cut(s) 35
BspFNI CGCG 1 cut(s) 284
BspLI GGNNCC 1 cut(s) 192
BsrI ACTGG 1 cut(s) 133
BssMI GATC 2 cut(s) 147, 319
Bst4CI ACNGT 1 cut(s) 64
BstEII GGTNACC 1 cut(s) 154
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 2 cut(s) 150, 322
BstMBI GATC 2 cut(s) 147, 319
BstPI GGTNACC 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 1 cut(s) 284
BsuRI GGCC 1 cut(s) 35
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 3 cut(s) 34, 81, 384
CseI GACGC 2 cut(s) 273, 313
Csp6I GTAC 4 cut(s) 60, 209, 280, 346
CviAII CATG 1 cut(s) 255
CviJI RGCY 5 cut(s) 19, 35, 164, 224, 334
CviKI_1 RGCY 5 cut(s) 19, 35, 164, 224, 334
CviQI GTAC 4 cut(s) 60, 209, 280, 346
DpnI GATC 2 cut(s) 149, 321
DpnII GATC 2 cut(s) 147, 319
Eco47I GGWCC 2 cut(s) 81, 384
Eco91I GGTNACC 1 cut(s) 154
EcoO65I GGTNACC 1 cut(s) 154
FaeI CATG 1 cut(s) 258
FaiI YATR 4 cut(s) 188, 256, 382, 413
FaqI GGGAC 1 cut(s) 145
FatI CATG 1 cut(s) 254
FspBI CTAG 2 cut(s) 57, 215
GlaI GCGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 164
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 1 cut(s) 35
HapII CCGG 4 cut(s) 20, 45, 114, 194
HgaI GACGC 2 cut(s) 273, 313
HhaI GCGC 1 cut(s) 145
Hin1II CATG 1 cut(s) 258
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 2 cut(s) 5, 360
HpaII CCGG 4 cut(s) 20, 45, 114, 194
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 3 cut(s) 15, 183, 221
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 241, 289
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 251, 352
Hsp92II CATG 1 cut(s) 258
HspAI GCGC 1 cut(s) 143
Kzo9I GATC 2 cut(s) 147, 319
LmnI GCTCC 1 cut(s) 221
MaeI CTAG 2 cut(s) 57, 215
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 149, 321
MboI GATC 2 cut(s) 147, 319
MboII GAAGA 3 cut(s) 35, 100, 301
MfeI CAATTG 1 cut(s) 87
MluCI AATT 2 cut(s) 87, 298
MluI ACGCGT 1 cut(s) 282
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 199
MnlI CCTC 2 cut(s) 52, 333
MseI TTAA 1 cut(s) 402
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 4 cut(s) 20, 45, 114, 194
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 87
MvnI CGCG 1 cut(s) 284
NciI CCSGG 1 cut(s) 115
NdeII GATC 2 cut(s) 147, 319
NlaIII CATG 1 cut(s) 258
NlaIV GGNNCC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 11
PfeI GAWTC 1 cut(s) 360
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspEI GGTNACC 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 3 cut(s) 34, 81, 384
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 4 cut(s) 61, 210, 281, 347
RsaNI GTAC 4 cut(s) 60, 209, 280, 346
SaqAI TTAA 1 cut(s) 402
Sau3AI GATC 2 cut(s) 147, 319
Sau96I GGNCC 3 cut(s) 34, 81, 384
ScaI AGTACT 2 cut(s) 61, 347
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 115
SetI ASST 2 cut(s) 166, 226
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 2 cut(s) 81, 384
Sse9I AATT 2 cut(s) 87, 298
SsiI CCGC 1 cut(s) 84
SspMI CTAG 2 cut(s) 57, 215
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 287
TasI AATT 2 cut(s) 87, 298
TatI WGTACW 2 cut(s) 59, 345
TfiI GAWTC 1 cut(s) 360
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 81, 384
XspI CTAG 2 cut(s) 57, 215
ZrmI AGTACT 2 cut(s) 61, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.