Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025019

Physical Location & Seq

Genomic Coordinates Reverse (-)

24058842 .. 24059132

Gene Structure 291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGAATCTCGATAGGAGATAAGGGCATGAAGCCAGCCTGCAGCTGGATTGAAGTTAAAAACAATGTTCATGCTTTTGTAGCGGGAGATGAACCCCACCCATATTATATTGAGATAATCAAGGCTCTGGAAGTTCTCTTGGAGCAGAAGGAGCGAGAAGGGTATGTGCCAAACACAAATGAGGTGCTCCAAGATGTTGAAGAGGAGCAAAAGAAGTACCTGTTGTGTCACCACAGTGAGAGGCTTGCCATAGCATTTGGCATCATTACCACTCCTGCTGGGACCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

96

Amino Acids

10.89

Weight (kDa)

5.17

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	54 - 95	3.9e-12	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0030301 RchiOBHm_Chr5g0030381
rosa_multiflora	Rmu_sc0001886.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	53, 200
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	1 cut(s)	45
AluI	AGCT	1 cut(s)	45
Alw21I	GWGCWC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	189
BspACI	CCGC	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	36, 40, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 151
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	36, 40, 246
Cfr13I	GGNCC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	28, 71
CviJI	RGCY	5 cut(s)	34, 38, 45, 125, 244
CviKI_1	RGCY	5 cut(s)	34, 38, 45, 125, 244
CviQI	GTAC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	282
FaeI	CATG	2 cut(s)	31, 74
FaiI	YATR	6 cut(s)	29, 72, 103, 108, 165, 251
FatI	CATG	2 cut(s)	27, 70
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	43
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	282
Hin1II	CATG	2 cut(s)	31, 74
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	221
Hpy188III	TCNNGA	2 cut(s)	10, 128
HpyAV	CCTTC	2 cut(s)	142, 152
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	1 cut(s)	42
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 151
Hsp92II	CATG	2 cut(s)	31, 74
LmnI	GCTCC	4 cut(s)	142, 151, 192, 205
LpnPI	CCDG	6 cut(s)	31, 48, 52, 113, 233, 264
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	227
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	189
MnlI	CCTC	3 cut(s)	175, 196, 234
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	80, 151
NlaIII	CATG	2 cut(s)	31, 74
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	3 cut(s)	47, 186, 222
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	234
SsiI	CCGC	1 cut(s)	83
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	3 cut(s)	44, 59, 105
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.