Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025019

Physical Location & Seq

Genomic Coordinates Reverse (-)

24019532 .. 24019828

Gene Structure 297 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30963

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGAATCTTGATGAGAAATAAGGGCATGAAAAAAAGGCCACCCTGCAGCTGGATTGAAGTTAAAAACAAGGTTCATGCTTTTGTAGTGGGAGATGAATCCCAACCATATTGTATTGAGATAATCAAGGCTCTGGAAGTTCTCTTGGAGCAGATGGAGCGAGAAGGGTATGTGCCAAACACAAATGAGGTGCTCCAAGATGTTGAAGAGGAGCAAAAGAAGTACCTGTTGTGTCACCACAGTGAGAGGCTTGCCATGGCATTTGGCATCATCAGCACTCCTGCTGGGACCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

98

Amino Acids

11.32

Weight (kDa)

5.93

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DYW_deaminase	PF14432	56 - 97	6.5e-12	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0030301 RchiOBHm_Chr5g0030381
rosa_multiflora	Rmu_sc0001886.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	2 cut(s)	59, 206
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw21I	GWGCWC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	48
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	1 cut(s)	148
BfmI	CTRYAG	1 cut(s)	46
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	1 cut(s)	289
BmsI	GCATC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	255
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	60
BseYI	CCCAGC	1 cut(s)	284
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	51
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	255
BspANI	GGCC	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	255
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 273
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	28, 77, 256
CviJI	RGCY	4 cut(s)	40, 51, 131, 250
CviKI_1	RGCY	4 cut(s)	40, 51, 131, 250
CviQI	GTAC	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	288
EcoT14I	CCWWGG	1 cut(s)	255
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	31, 80, 259
FaiI	YATR	5 cut(s)	29, 78, 109, 171, 257
FatI	CATG	3 cut(s)	27, 76, 255
Fnu4HI	GCNGC	1 cut(s)	49
Fsp4HI	GCNGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	49
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	31, 80, 259
HinfI	GANTC	2 cut(s)	6, 98
HphI	GGTGA	1 cut(s)	227
Hpy188III	TCNNGA	2 cut(s)	10, 134
HpyAV	CCTTC	1 cut(s)	158
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 273
Hsp92II	CATG	3 cut(s)	31, 80, 259
LmnI	GCTCC	4 cut(s)	148, 157, 198, 211
LpnPI	CCDG	5 cut(s)	37, 58, 119, 239, 270
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	233
MboII	GAAGA	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	181, 202, 240
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	51
MwoI	GCNNNNNNNGC	2 cut(s)	157, 273
NcoI	CCATGG	1 cut(s)	255
NlaIII	CATG	3 cut(s)	31, 80, 259
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	1 cut(s)	233
OliI	CACNNNNGTG	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	6, 98
PkrI	GCNGC	1 cut(s)	50
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	288
PstI	CTGCAG	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	51
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	4 cut(s)	53, 75, 192, 228
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	6, 98
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	3 cut(s)	44, 65, 111
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	288
XcmI	CCANNNNNNNNNTGG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.