Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001886.1

Orthogroup ID

OG0025019

Physical Location & Seq

Genomic Coordinates Reverse (-)

44095 .. 45548

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001886.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgagaatctcgataagagataagggcataaagccagcctgcagctggattgaagttaaaaacaatgttcatgcttttgtagcgggagatgaatcccacccatattatattgagataatcaaggctctggaagttctcttggagcagaaggagcgagaagggtatgtgccaaacacaaatgaggtgctccaagatgttgaagaggagcaaaagaagtacctgttgtgtcaccacagtgagaggcttgccatagcatttggcatcattaccactcctgctgggaccgatggaggaggatacgctgagatggtagctgtgcaagaaggattggtatttcctatccccaaaagtatttctgtggaggaggctgctagtttccctcaagtggcctgtggtgtttgggccgcaccttttatgggaaacaagctatgtcttgaatattggttacccgatggtaggaacagtcggctaattgccggtgaaactatattggtaacttcccccaagtccaccaatctgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

174

Amino Acids

19.25

Weight (kDa)

5.27

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025019)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0030301 RchiOBHm_Chr5g0030381
rosa_multiflora	Rmu_sc0001886.1_g000008

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	83, 405
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	45, 385, 416, 456
AgsI	TTSAA	3 cut(s)	53, 200, 437
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	3 cut(s)	45, 314, 427
AluI	AGCT	3 cut(s)	45, 314, 427
Alw21I	GWGCWC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	387, 402
ApeKI	GCWGC	2 cut(s)	42, 368
AspS9I	GGNCC	2 cut(s)	282, 402
AsuHPI	GGTGA	2 cut(s)	221, 491
AvaII	GGWCC	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	54, 355
BccI	CCATC	3 cut(s)	281, 301, 446
BciVI	GTATCC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	372
BfmI	CTRYAG	1 cut(s)	40
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	3 cut(s)	43, 369, 405
BlsI	GCNGC	3 cut(s)	44, 370, 406
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	282, 402
BmiI	GGNNCC	1 cut(s)	283
BmsI	GCATC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 385, 416, 456
Bse118I	RCCGGY	1 cut(s)	476
BseLI	CCNNNNNNNGG	4 cut(s)	45, 385, 416, 456
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	3 cut(s)	218, 306, 377
BseXI	GCAGC	2 cut(s)	54, 355
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	2 cut(s)	389, 404
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	4 cut(s)	45, 385, 416, 456
BsmFI	GGGAC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	389, 404
Bsp1286I	GDGCHC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	83, 405
BspANI	GGCC	2 cut(s)	389, 404
BspCNI	CTCAG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	44
BsrFI	RCCGGY	1 cut(s)	476
BssAI	RCCGGY	1 cut(s)	476
Bst4CI	ACNGT	2 cut(s)	236, 464
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	36, 40, 246
BstDEI	CTNAG	1 cut(s)	303
BstEII	GGTNACC	1 cut(s)	444
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 151
BstPI	GGTNACC	1 cut(s)	444
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	54, 355
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	389, 404
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	3 cut(s)	36, 40, 246
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	282, 402
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	1 cut(s)	71
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	444
FaeI	CATG	1 cut(s)	74
FaiI	YATR	9 cut(s)	29, 72, 103, 108, 165, 251, 416, 430, 488
FaqI	GGGAC	1 cut(s)	295
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	43, 369, 405
Fsp4HI	GCNGC	3 cut(s)	43, 369, 405
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	3 cut(s)	43, 369, 405
GsaI	CCCAGC	1 cut(s)	282
HaeIII	GGCC	2 cut(s)	389, 404
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	2 cut(s)	6, 92
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	2 cut(s)	221, 491
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	3 cut(s)	10, 128, 434
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	3 cut(s)	142, 152, 317
HpyCH4III	ACNGT	2 cut(s)	236, 464
HpyCH4V	TGCA	2 cut(s)	42, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 151
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	74
LmnI	GCTCC	4 cut(s)	142, 151, 192, 205
LpnPI	CCDG	9 cut(s)	31, 48, 52, 113, 233, 264, 288, 403, 490
Lsp1109I	GCAGC	2 cut(s)	54, 355
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	372
MaeIII	GTNAC	3 cut(s)	227, 444, 493
MboII	GAAGA	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	1 cut(s)	471
MnlI	CCTC	8 cut(s)	175, 196, 234, 284, 287, 355, 358, 390
MseI	TTAA	1 cut(s)	57
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	80, 151
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	283
NmuCI	GTSAC	1 cut(s)	227
OliI	CACNNNNGTG	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	6, 92
PkrI	GCNGC	3 cut(s)	44, 370, 406
PspEI	GGTNACC	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	283
PspPI	GGNCC	2 cut(s)	282, 402
PstI	CTGCAG	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	43, 369, 405
Sau96I	GGNCC	2 cut(s)	282, 402
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	6 cut(s)	47, 186, 222, 316, 412, 429
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	471
SsiI	CCGC	2 cut(s)	83, 405
SspI	AATATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	236, 464
TaqI	TCGA	1 cut(s)	11
TaqII	GACCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	471
TauI	GCSGC	1 cut(s)	407
TfiI	GAWTC	2 cut(s)	6, 92
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	1 cut(s)	241
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	42, 368
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	2 cut(s)	59, 105
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	42
XspI	CTAG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.