Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025011

Physical Location & Seq

Genomic Coordinates Reverse (-)

24135475 .. 24136468

Gene Structure 994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTGGGTAAGGATGAAGAGGGAGATTTCGCGAGGGGGACAGCTCGCCGTCTGTGTTGGGCGTCTAAGAGGAGAGAAATATCGATCTGGAGCTTGTTTTGATGCAGCTCGAGGAATTATTTCTGGACTGAAGGTCAGAGGAATAGCTTATGCGACACCTGATGGCACTTGCGTGAGGGACTATATTGATGTCACTGACCTGGTTGATGCTCATGTAAAAGCTCTTGCCAACGCACAGCCAAGTAAAGTTGGCATCTACAACGTGGGAACTGGAAAAGGTAATTCAGTGAAGGAGTTTGTGGAAGCATGTAAGAAGGCGCAAGGGCTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

110

Amino Acids

11.8

Weight (kDa)

9.61

Isoelectric Point (pI)

14.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	22 - 89	1.3e-06	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0025011)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0030221 RchiOBHm_Chr5g0030421 RchiOBHm_Chr5g0030481

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	31
AcuI	CTGAAG	1 cut(s)	149
AcyI	GRCGYC	1 cut(s)	61
AhdI	GACNNNNNGTC	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	198
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	5 cut(s)	43, 92, 107, 146, 221
AluI	AGCT	5 cut(s)	43, 92, 107, 146, 221
Ama87I	CYCGRG	1 cut(s)	108
ApeKI	GCWGC	1 cut(s)	104
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	319
AvaI	CYCGRG	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	116
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	200
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	200
BmeRI	GACNNNNNGTC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	108
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	3 cut(s)	91, 196, 261
BpmI	CTGGAG	1 cut(s)	108
Bsa29I	ATCGAT	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	82
BseGI	GGATG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	31
BshVI	ATCGAT	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	108
BslFI	GGGAC	2 cut(s)	51, 191
BsmFI	GGGAC	2 cut(s)	51, 191
BsoBI	CYCGRG	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	83
Bsp68I	TCGCGA	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	83
BssNI	GRCGYC	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	82
BsuTUI	ATCGAT	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	192, 291
BtuMI	TCGCGA	1 cut(s)	31
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	1 cut(s)	319
ClaI	ATCGAT	1 cut(s)	82
CseI	GACGC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	198
CviAII	CATG	2 cut(s)	212, 306
CviJI	RGCY	7 cut(s)	43, 92, 107, 146, 221, 238, 325
CviKI_1	RGCY	7 cut(s)	43, 92, 107, 146, 221, 238, 325
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
DriI	GACNNNNNGTC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	11
Eam1105I	GACNNNNNGTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	149
Eco88I	CYCGRG	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	215, 309
FaiI	YATR	5 cut(s)	150, 183, 213, 307, 331
FaqI	GGGAC	2 cut(s)	51, 191
FatI	CATG	2 cut(s)	211, 305
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	105
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	108
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	319
Hin1I	GRCGYC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	215, 309
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	3 cut(s)	30, 87, 123
HpyAV	CCTTC	3 cut(s)	124, 283, 307
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	215, 309
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	83
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	6 cut(s)	72, 108, 171, 185, 212, 255
Lsp1109I	GCAGC	1 cut(s)	116
LweI	GCATC	3 cut(s)	91, 196, 261
MabI	ACCWGGT	1 cut(s)	198
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	2 cut(s)	114, 280
MnlI	CCTC	6 cut(s)	12, 26, 62, 104, 131, 168
MroXI	GAANNNNTTC	1 cut(s)	118
MslI	CAYNNNNRTG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	31
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	2 cut(s)	215, 309
NmuCI	GTSAC	1 cut(s)	190
NruI	TCGCGA	1 cut(s)	31
NspI	RCATGY	1 cut(s)	309
OliI	CACNNNNGTG	1 cut(s)	170
PaeR7I	CTCGAG	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspXI	VCTCGAGB	1 cut(s)	108
RruI	TCGCGA	1 cut(s)	31
RseI	CAYNNNNRTG	1 cut(s)	170
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	200
SexAI	ACCWGGT	1 cut(s)	198
SfaNI	GCATC	3 cut(s)	91, 196, 261
Sfr274I	CTCGAG	1 cut(s)	108
SlaI	CTCGAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	114, 280
StyD4I	CCNGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	2 cut(s)	82, 109
TasI	AATT	2 cut(s)	114, 280
TscAI	CASTG	2 cut(s)	199, 291
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	2 cut(s)	199, 291
XceI	RCATGY	1 cut(s)	309
XhoI	CTCGAG	1 cut(s)	108
XmnI	GAANNNNTTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.