RchiOBHm_Chr5g0030221

UDP-arabinose 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025011
Physical Location & Seq
Reverse (-)
23971820 .. 23973700
1881 bp
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UTR
Exon/CDS
Intron
PRQ30955

Sequence Viewer

Length: 303 bp
ATGTGGGTAAGGATGAAGAGGGAGATTTCGCGAGGGAGACAGCTCGCCGTCTGTGTTGGGCGTCTAAGAGGAGAGACTCGAGGAATTATTTCTGGACTGAAGGTCAGAGGAATAGCTTATGCGACACCTGATGGCACTTGCGCAAGGGACTATATTGATGTCACTGACCTGGTTGATGCTCATGTAAAAGCTCTTGCCAACGCACAGCCAAGTAAAGTTGGCATCTACAACGTGGGAACTGGAAAAGGTAATTCAGTGAAGGAGTTTATGGAAGCATGTAAGAAGGCGCAGGGGCTGATATAA

Protein Analysis

100

Amino Acids

10.84

Weight (kDa)

9.81

Isoelectric Point (pI)

8.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 44 - 79 4.6e-06 NAD dependent epimerase/dehydratase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025011)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0030221 RchiOBHm_Chr5g0030421 RchiOBHm_Chr5g0030481

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 142
AccII CGCG 1 cut(s) 31
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 61
AhdI GACNNNNNGTC 1 cut(s) 101
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 3 cut(s) 43, 116, 191
AluI AGCT 3 cut(s) 43, 116, 191
Alw26I GTCTC 2 cut(s) 31, 68
AlwNI CAGNNNCTG 1 cut(s) 295
Ama87I CYCGRG 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 88
AspLEI GCGC 2 cut(s) 143, 289
AvaI CYCGRG 1 cut(s) 78
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 31, 68
Bme1390I CCNGG 1 cut(s) 170
BmeRI GACNNNNNGTC 1 cut(s) 101
BmeT110I CYCGRG 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 170
BmsI GCATC 2 cut(s) 166, 231
BsaHI GRCGYC 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 170
BseGI GGATG 1 cut(s) 18
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 31
BsiHKCI CYCGRG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 31, 68
BsmFI GGGAC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 78
Bsp68I TCGCGA 1 cut(s) 31
BspFNI CGCG 1 cut(s) 31
BsrI ACTGG 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 2 cut(s) 143, 289
BstMAI GTCTC 2 cut(s) 31, 68
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 2 cut(s) 162, 261
BtuMI TCGCGA 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 45
CaiI CAGNNNCTG 1 cut(s) 295
CfoI GCGC 2 cut(s) 143, 289
CseI GACGC 1 cut(s) 50
CsiI ACCWGGT 1 cut(s) 168
CviAII CATG 2 cut(s) 182, 276
CviJI RGCY 5 cut(s) 43, 116, 191, 208, 295
CviKI_1 RGCY 5 cut(s) 43, 116, 191, 208, 295
DdeI CTNAG 1 cut(s) 65
DriI GACNNNNNGTC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 11
Eam1105I GACNNNNNGTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 11
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 168
FaeI CATG 2 cut(s) 185, 279
FaiI YATR 6 cut(s) 120, 153, 183, 269, 277, 301
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 181, 275
FokI GGATG 1 cut(s) 25
FspI TGCGCA 1 cut(s) 142
GlaI GCGC 2 cut(s) 142, 288
HgaI GACGC 1 cut(s) 50
HhaI GCGC 2 cut(s) 143, 289
Hin1I GRCGYC 1 cut(s) 61
Hin1II CATG 2 cut(s) 185, 279
Hin6I GCGC 2 cut(s) 141, 287
HinP1I GCGC 2 cut(s) 141, 287
HinfI GANTC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 30, 93
HpyAV CCTTC 3 cut(s) 94, 253, 277
HpyCH4IV ACGT 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 61
Hsp92II CATG 2 cut(s) 185, 279
HspAI GCGC 2 cut(s) 141, 287
LpnPI CCDG 6 cut(s) 78, 141, 155, 182, 225, 275
LweI GCATC 2 cut(s) 166, 231
MabI ACCWGGT 1 cut(s) 168
MaeII ACGT 1 cut(s) 231
MaeIII GTNAC 1 cut(s) 160
MboII GAAGA 1 cut(s) 28
MluCI AATT 2 cut(s) 84, 250
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 5 cut(s) 12, 26, 62, 74, 101
MroXI GAANNNNTTC 1 cut(s) 88
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 31
NlaIII CATG 2 cut(s) 185, 279
NmuCI GTSAC 1 cut(s) 160
NruI TCGCGA 1 cut(s) 31
NsbI TGCGCA 1 cut(s) 142
NspI RCATGY 1 cut(s) 279
PaeR7I CTCGAG 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 88
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspXI VCTCGAGB 1 cut(s) 78
PstNI CAGNNNCTG 1 cut(s) 295
RruI TCGCGA 1 cut(s) 31
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 170
SetI ASST 8 cut(s) 45, 105, 118, 130, 171, 193, 234, 250
SexAI ACCWGGT 1 cut(s) 168
SfaNI GCATC 2 cut(s) 166, 231
Sfr274I CTCGAG 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 2 cut(s) 84, 250
StyD4I CCNGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 234
TaqI TCGA 1 cut(s) 79
TasI AATT 2 cut(s) 84, 250
TscAI CASTG 2 cut(s) 169, 261
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 2 cut(s) 169, 261
XceI RCATGY 1 cut(s) 279
XhoI CTCGAG 1 cut(s) 78
XmnI GAANNNNTTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.