Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025011

Physical Location & Seq

Genomic Coordinates Reverse (-)

24091089 .. 24092710

Gene Structure 1622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30975

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCAGAAGATATCATACTGGATTTTTCCAAGAACTCAAACATGGCAGTCATGAGCTTACAGTATAAATATCGATCTGGAGCTTGTTTTGATGCAGCTCGAGGAATTATTTCTGGACTGAAGGTCAGAGGAATAGCTTATGCGACACCTGATGGCACTTGCGTGAGGGACTATATTGATGTCACTGACCTGGTTGATGCTCATGTAAAAGCTCTTGCCAACGCACAACCAAGTAAAGTTGGCATCTACAACGTGGGAACTGGAAAAGGTAATTCAGTGAAGGAGTTTGTGGAAGCATGTAAGAAGGCGCAGGGGCTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0009058 GO:0009832 GO:0009987 GO:0012505 GO:0016051 GO:0016853 GO:0016854 GO:0016857 GO:0019321 GO:0019322 GO:0019566 GO:0019567 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044238 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046364 GO:0050373 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

107

Amino Acids

11.44

Weight (kDa)

8.45

Isoelectric Point (pI)

20.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	49 - 86	2.7e-06	NAD dependent epimerase/dehydratase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0025011)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0030221 RchiOBHm_Chr5g0030421 RchiOBHm_Chr5g0030481

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	140
AhdI	GACNNNNNGTC	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	189
AleI	CACNNNNGTG	1 cut(s)	161
AluBI	AGCT	5 cut(s)	57, 83, 98, 137, 212
AluI	AGCT	5 cut(s)	57, 83, 98, 137, 212
AlwNI	CAGNNNCTG	1 cut(s)	316
Ama87I	CYCGRG	1 cut(s)	99
ApeKI	GCWGC	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	99
BarI	GAAGNNNNNNTAC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	107
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	191
BmeRI	GACNNNNNGTC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	3 cut(s)	82, 187, 252
BpmI	CTGGAG	1 cut(s)	99
Bsa29I	ATCGAT	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	24, 265
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	73
BseNI	ACTGG	2 cut(s)	24, 265
BseXI	GCAGC	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	74
BspDI	ATCGAT	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	24, 265
BssMI	GATC	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	107
Bsu15I	ATCGAT	1 cut(s)	73
BsuTUI	ATCGAT	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	183, 282
CaiI	CAGNNNCTG	1 cut(s)	316
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	1 cut(s)	310
ClaI	ATCGAT	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	189
CviAII	CATG	4 cut(s)	43, 52, 203, 297
CviJI	RGCY	6 cut(s)	57, 83, 98, 137, 212, 316
CviKI_1	RGCY	6 cut(s)	57, 83, 98, 137, 212, 316
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
DriI	GACNNNNNGTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	13
FaeI	CATG	4 cut(s)	46, 55, 206, 300
FaiI	YATR	9 cut(s)	17, 44, 53, 66, 141, 174, 204, 298, 322
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	42, 51, 202, 296
Fnu4HI	GCNGC	1 cut(s)	96
Fsp4HI	GCNGC	1 cut(s)	96
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	1 cut(s)	96
GsuI	CTGGAG	1 cut(s)	99
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	4 cut(s)	46, 55, 206, 300
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	3 cut(s)	52, 78, 114
HpyAV	CCTTC	3 cut(s)	115, 274, 298
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	4 cut(s)	46, 55, 206, 300
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	8 cut(s)	5, 63, 99, 162, 176, 203, 246, 296
Lsp1109I	GCAGC	1 cut(s)	107
LweI	GCATC	3 cut(s)	82, 187, 252
MabI	ACCWGGT	1 cut(s)	189
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	1 cut(s)	20
MluCI	AATT	2 cut(s)	105, 271
MnlI	CCTC	3 cut(s)	95, 122, 159
MroXI	GAANNNNTTC	1 cut(s)	109
MslI	CAYNNNNRTG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	4 cut(s)	46, 55, 206, 300
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	300
OliI	CACNNNNGTG	1 cut(s)	161
PaeR7I	CTCGAG	1 cut(s)	99
PagI	TCATGA	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspXI	VCTCGAGB	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	161
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	191
SexAI	ACCWGGT	1 cut(s)	189
SfaNI	GCATC	3 cut(s)	82, 187, 252
Sfr274I	CTCGAG	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	105, 271
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	73, 100
TasI	AATT	2 cut(s)	105, 271
TscAI	CASTG	2 cut(s)	190, 282
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	181
TspRI	CASTG	2 cut(s)	190, 282
XceI	RCATGY	1 cut(s)	300
XhoI	CTCGAG	1 cut(s)	99
XmnI	GAANNNNTTC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.