RchiOBHm_Chr5g0031001

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
24622693 .. 24623555
863 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 165 bp
ATGACGGATTCGAATCTGGAGCTACAGGAATCGGGGTGGGAGGAGCTGAGGAGAGAGGCCCGCAAGATCGAGGGAGATCTTGACTTAAAGCTTTCTTCTTATGCTAAACTCGGACCTCGGTTCACACAAGGAGGAGGTTCATTTCTGTCTTCTTTTTTTTTTTGA

Protein Analysis

54

Amino Acids

6.15

Weight (kDa)

4.89

Isoelectric Point (pI)

63.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022781)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0031001
rosa_samantha Rh4DG196300 Rh5AG257300 Rh7DG128800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AluBI AGCT 3 cut(s) 22, 46, 91
AluI AGCT 3 cut(s) 22, 46, 91
AoxI GGCC 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 58, 113
AsuII TTCGAA 1 cut(s) 11
AvaII GGWCC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 141
BbvCI CCTCAGC 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 23
BglII AGATCT 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 58, 113
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 38
Bpu10I CCTNAGC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 116
BseJI GATNNNNATC 1 cut(s) 12
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 3 cut(s) 56, 64, 147
BshFI GGCC 1 cut(s) 59
BsnI GGCC 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 11
Bsp143I GATC 2 cut(s) 66, 76
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 2 cut(s) 66, 76
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 47
BstKTI GATC 2 cut(s) 69, 79
BstMBI GATC 2 cut(s) 66, 76
BstSFI CTRYAG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 58, 113
CviJI RGCY 4 cut(s) 22, 46, 59, 91
CviKI_1 RGCY 4 cut(s) 22, 46, 59, 91
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 68, 78
DpnII GATC 2 cut(s) 66, 76
Eco47I GGWCC 1 cut(s) 113
FaiI YATR 1 cut(s) 102
FauI CCCGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 38
HaeIII GGCC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 8, 13, 29
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 2 cut(s) 17, 80
Hpy8I GTNNAC 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 47
Kzo9I GATC 2 cut(s) 66, 76
LmnI GCTCC 2 cut(s) 19, 43
LpnPI CCDG 2 cut(s) 2, 11
MalI GATC 2 cut(s) 68, 78
MboI GATC 2 cut(s) 66, 76
MboII GAAGA 2 cut(s) 87, 141
MflI RGATCY 1 cut(s) 76
MnlI CCTC 7 cut(s) 34, 42, 49, 64, 125, 126, 128
MseI TTAA 1 cut(s) 86
NdeII GATC 2 cut(s) 66, 76
NspV TTCGAA 1 cut(s) 11
PfeI GAWTC 3 cut(s) 8, 13, 29
PspPI GGNCC 2 cut(s) 58, 113
PsuI RGATCY 1 cut(s) 76
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 2 cut(s) 66, 76
Sau96I GGNCC 2 cut(s) 58, 113
SetI ASST 5 cut(s) 24, 48, 93, 118, 139
SfcI CTRYAG 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 11
SinI GGWCC 1 cut(s) 113
SsiI CCGC 1 cut(s) 61
TaqI TCGA 2 cut(s) 11, 69
TfiI GAWTC 3 cut(s) 8, 13, 29
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.