Rh7DG128800

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Forward (+)
10824226 .. 10824492
267 bp
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UTR
Exon/CDS
Intron
Rh7DG128800.1

Sequence Viewer

Length: 225 bp
ATGACGGATTCGAATCTGGAGCTACAGGAATCAGGGTGGGAGGAGTTGAGGAGAGACGCCCGCAAGATTGAAGGAGATCTTGACGTCAAGCTTTCTTCTTATGCTAAACTCGAAACTCGGTTCACACAAGGAGGAGGGATGGTGGTGACGGCGGTGTCGTCGGAGATGAGGGGGTTGGAGAGAGAAACGTCATCATTTTGGGAGATGGGGGTTTGGTGGCAATAG

Protein Analysis

74

Amino Acids

8.53

Weight (kDa)

4.61

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022781)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0031001
rosa_samantha Rh4DG196300 Rh5AG257300 Rh7DG128800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 154
AatII GACGTC 1 cut(s) 87
AciI CCGC 2 cut(s) 61, 152
AcyI GRCGYC 2 cut(s) 57, 84
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 2 cut(s) 22, 91
AluI AGCT 2 cut(s) 22, 91
Alw26I GTCTC 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 11
BccI CCATC 2 cut(s) 133, 199
BceAI ACGGC 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 23
BglII AGATCT 1 cut(s) 76
BpmI CTGGAG 1 cut(s) 38
Bpu14I TTCGAA 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 57, 84
BsaXI ACNNNNNCTCC 2 cut(s) 126, 156
Bse8I GATNNNNATC 1 cut(s) 12
BseGI GGATG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 12
BseRI GAGGAG 3 cut(s) 56, 64, 147
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
Bsp119I TTCGAA 1 cut(s) 11
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 2 cut(s) 61, 152
BspT104I TTCGAA 1 cut(s) 11
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 2 cut(s) 57, 84
BstACI GRCGYC 2 cut(s) 57, 84
BstBI TTCGAA 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 1 cut(s) 76
BstSFI CTRYAG 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BtsCI GGATG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 61
CseI GACGC 1 cut(s) 65
CviJI RGCY 2 cut(s) 22, 91
CviKI_1 RGCY 2 cut(s) 22, 91
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DrdI GACNNNNNNGTC 1 cut(s) 154
DseDI GACNNNNNNGTC 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 48
FaiI YATR 1 cut(s) 102
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FauI CCCGC 1 cut(s) 68
FokI GGATG 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 38
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 57, 84
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 8, 13, 29
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 17, 80
Hpy8I GTNNAC 1 cut(s) 123
Hpy99I CGWCG 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 84, 188
HpySE526I ACGT 2 cut(s) 84, 188
Hsp92I GRCGYC 2 cut(s) 57, 84
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 19
LpnPI CCDG 3 cut(s) 2, 11, 18
MaeII ACGT 2 cut(s) 84, 188
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 87
MflI RGATCY 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 141, 156
MnlI CCTC 5 cut(s) 34, 42, 125, 128, 162
NdeII GATC 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 145
NspV TTCGAA 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfeI GAWTC 3 cut(s) 8, 13, 29
PsuI RGATCY 1 cut(s) 76
Sau3AI GATC 1 cut(s) 76
SetI ASST 4 cut(s) 24, 87, 93, 191
SfcI CTRYAG 1 cut(s) 23
SfuI TTCGAA 1 cut(s) 11
SsiI CCGC 2 cut(s) 61, 152
TaiI ACGT 2 cut(s) 87, 191
TaqI TCGA 2 cut(s) 11, 111
TfiI GAWTC 3 cut(s) 8, 13, 29
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 20
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.