Rh4DG196300

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide- sensitive factor) attachment protein receptor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
38333000 .. 38333436
437 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG196300.1

Sequence Viewer

Length: 297 bp
ATGGATCTACAGAAATTGGGGTGGGAGGAGCTGAGGAGAGAGGCCCGCAAGATCGAGGGAGATCTTGACGTCAAGCTTTCTTCTTATGCTAAGGTCGGAGCTCGGTTCACACAAGGAGGATGGGTTGTGATGATCGAAGAACGCCCCCAAATTGGACTTGAACATCTTAACCCCGCTAACATGATCGAAGAAAAATCAGCAGGGATGGTGGTGACTGCGGCGGTGGAGTCGTCGGAGATGAGGGGGTTGGAGAGAGAAACGTCATCTTTTTGGGAGATGGGGGTTTGGTTGCGATAG

Protein Analysis

98

Amino Acids

11.18

Weight (kDa)

5.05

Isoelectric Point (pI)

58.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022781)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0031001
rosa_samantha Rh4DG196300 Rh5AG257300 Rh7DG128800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 72
AciI CCGC 4 cut(s) 46, 174, 218, 221
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 69
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 3 cut(s) 31, 76, 101
AluI AGCT 3 cut(s) 31, 76, 101
Alw21I GWGCWC 1 cut(s) 103
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 223
BanII GRGCYC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 32
BccI CCATC 3 cut(s) 114, 199, 271
BfmI CTRYAG 1 cut(s) 8
BglII AGATCT 1 cut(s) 61
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 43
Bpu10I CCTNAGC 2 cut(s) 32, 90
BsaHI GRCGYC 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 125, 210
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 23
BseRI GAGGAG 2 cut(s) 41, 49
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 152
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 5 cut(s) 4, 51, 61, 132, 183
BspACI CCGC 4 cut(s) 46, 174, 218, 221
BspANI GGCC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 24
BspPI GGATC 1 cut(s) 12
BssMI GATC 5 cut(s) 4, 51, 61, 132, 183
BssNI GRCGYC 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 32, 90
BstF5I GGATG 2 cut(s) 125, 210
BstKTI GATC 5 cut(s) 7, 54, 64, 135, 186
BstMBI GATC 5 cut(s) 4, 51, 61, 132, 183
BstSFI CTRYAG 1 cut(s) 8
BstX2I RGATCY 2 cut(s) 4, 61
BstYI RGATCY 2 cut(s) 4, 61
BsuRI GGCC 1 cut(s) 44
BtsCI GGATG 2 cut(s) 125, 210
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 43
CviAII CATG 1 cut(s) 181
CviJI RGCY 4 cut(s) 31, 44, 76, 101
CviKI_1 RGCY 4 cut(s) 31, 44, 76, 101
DdeI CTNAG 2 cut(s) 32, 90
DpnI GATC 5 cut(s) 6, 53, 63, 134, 185
DpnII GATC 5 cut(s) 4, 51, 61, 132, 183
Ecl136II GAGCTC 1 cut(s) 101
Eco24I GRGCYC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 101
EcoICRI GAGCTC 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 103
FaeI CATG 1 cut(s) 184
FaiI YATR 2 cut(s) 87, 182
FatI CATG 1 cut(s) 180
FauI CCCGC 2 cut(s) 53, 181
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 132, 217
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 1 cut(s) 227
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 108
Hpy188I TCNGA 2 cut(s) 98, 235
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 108
Hpy99I CGWCG 1 cut(s) 235
HpyCH4IV ACGT 2 cut(s) 69, 260
HpyF3I CTNAG 2 cut(s) 32, 90
HpySE526I ACGT 2 cut(s) 69, 260
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 5 cut(s) 4, 51, 61, 132, 183
LmnI GCTCC 2 cut(s) 28, 98
LpnPI CCDG 1 cut(s) 186
MaeII ACGT 2 cut(s) 69, 260
MaeIII GTNAC 1 cut(s) 211
MalI GATC 5 cut(s) 6, 53, 63, 134, 185
MboI GATC 5 cut(s) 4, 51, 61, 132, 183
MboII GAAGA 3 cut(s) 72, 149, 200
MflI RGATCY 2 cut(s) 4, 61
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 2 cut(s) 14, 150
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 3 cut(s) 76, 213, 228
MnlI CCTC 6 cut(s) 19, 27, 34, 49, 110, 234
MseI TTAA 1 cut(s) 168
NdeII GATC 5 cut(s) 4, 51, 61, 132, 183
NlaIII CATG 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp124BI GAGCTC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 2 cut(s) 4, 61
SacI GAGCTC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 5 cut(s) 4, 51, 61, 132, 183
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 103
SetI ASST 6 cut(s) 33, 72, 78, 96, 103, 263
SfcI CTRYAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 14, 150
SsiI CCGC 4 cut(s) 46, 174, 218, 221
SstI GAGCTC 1 cut(s) 103
TaiI ACGT 2 cut(s) 72, 263
TaqI TCGA 3 cut(s) 54, 135, 186
TasI AATT 2 cut(s) 14, 150
TauI GCSGC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TseFI GTSAC 1 cut(s) 211
Tsp45I GTSAC 1 cut(s) 211
ZraI GACGTC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.