RchiOBHm_Chr5g0034501

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025007
Physical Location & Seq
Reverse (-)
28368345 .. 28369487
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 525 bp
ATGACTTGGTCTTTGCTGCTGCACTTGCTCATGTCGAGATACATGATTAGGCAGATTAACCCAAGACTTCTTCTTCTGCACTTCTCCTCCAACTACCATGATTCACCCCAGGCCCATATCCTCTTTTCTCAGAGCTCCTCCACCTACTGCCTCCTCACCCTTGACCCCCCACCCCCACCCCTACCCACCACGCCACCTTCTCGATTCACATTGGGTTCCATCTTTCCCAGCTCCCTGTCCGAGCCTAGATCGCTCTGGTCCGACTCCAAGCCCATCCGGTCCAAACCGGAAGTCATTAACTCAAAGGAGCTCATGGCGGCCTCGATGCCGACAGCTCTAGGTTATCGCATCTCTCACCATCGAAACCCTTCTCGATTCGAACCCCGAAAGCCTCGGATATGTGGGCGGATCCGAGGAGGTATTGAAAACTGTGGAGGAGGGGTTGTGGAGGTGGTGGTAGGGCAGAAGCACCAGCGGGAGGGGGGGGGGTGCGTGAGGACATTAGGGCGTGGGATAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

174

Amino Acids

19.48

Weight (kDa)

10.64

Isoelectric Point (pI)

63.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025007)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0034501
rosa_samantha Rh3CG290300 Rh5DG246700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 317, 406, 475
AclWI GGATC 2 cut(s) 403, 416
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 4 cut(s) 135, 231, 310, 335
AluI AGCT 4 cut(s) 135, 231, 310, 335
Alw21I GWGCWC 2 cut(s) 137, 312
AlwI GGATC 2 cut(s) 403, 416
AoxI GGCC 2 cut(s) 111, 318
ApeKI GCWGC 2 cut(s) 16, 19
ArsI GACNNNNNNTTYG 3 cut(s) 27, 276, 308
Asp700I GAANNNNTTC 1 cut(s) 367
AspS9I GGNCC 3 cut(s) 112, 258, 279
AsuHPI GGTGA 3 cut(s) 96, 148, 347
AsuII TTCGAA 1 cut(s) 378
AvaII GGWCC 2 cut(s) 258, 279
BamHI GGATCC 1 cut(s) 408
BanII GRGCYC 2 cut(s) 137, 312
Bbv12I GWGCWC 2 cut(s) 137, 312
BbvI GCAGC 2 cut(s) 3, 6
BccI CCATC 3 cut(s) 227, 281, 366
BciT130I CCWGG 1 cut(s) 110
BfaI CTAG 2 cut(s) 246, 338
BisI GCNGC 3 cut(s) 17, 20, 318
BlsI GCNGC 3 cut(s) 18, 21, 319
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 258, 279
BmgT120I GGNCC 3 cut(s) 112, 258, 279
BmiI GGNNCC 2 cut(s) 217, 410
BmrFI CCNGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 315, 357
Bpu14I TTCGAA 1 cut(s) 378
BsaJI CCNNGG 3 cut(s) 108, 392, 412
BsaWI WCCGGW 2 cut(s) 276, 286
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 426, 429, 456, 459
Bsc4I CCNNNNNNNGG 1 cut(s) 478
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 3 cut(s) 108, 392, 412
BseGI GGATG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 5 cut(s) 76, 127, 143, 429, 450
BseXI GCAGC 2 cut(s) 3, 6
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 2 cut(s) 5, 62
BshFI GGCC 2 cut(s) 113, 320
BsiHKAI GWGCWC 2 cut(s) 137, 312
BsiSI CCGG 2 cut(s) 277, 287
BslI CCNNNNNNNGG 1 cut(s) 478
BsnI GGCC 2 cut(s) 113, 320
Bsp119I TTCGAA 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 137, 312
Bsp143I GATC 2 cut(s) 248, 408
BspACI CCGC 3 cut(s) 317, 406, 475
BspANI GGCC 2 cut(s) 113, 320
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 217, 410
BspPI GGATC 2 cut(s) 403, 416
BspT104I TTCGAA 1 cut(s) 378
BssECI CCNNGG 3 cut(s) 108, 392, 412
BssMI GATC 2 cut(s) 248, 408
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 431
BstBI TTCGAA 1 cut(s) 378
BstDEI CTNAG 1 cut(s) 129
BstF5I GGATG 1 cut(s) 273
BstKTI GATC 2 cut(s) 251, 411
BstMBI GATC 2 cut(s) 248, 408
BstMWI GCNNNNNNNGC 2 cut(s) 25, 250
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 3, 6
BstX2I RGATCY 1 cut(s) 408
BstYI RGATCY 1 cut(s) 408
BsuRI GGCC 2 cut(s) 113, 320
BtsCI GGATG 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 112, 258, 279
CviAII CATG 4 cut(s) 31, 43, 98, 313
CviJI RGCY 9 cut(s) 113, 135, 231, 244, 271, 310, 320, 335, 391
CviKI_1 RGCY 9 cut(s) 113, 135, 231, 244, 271, 310, 320, 335, 391
DdeI CTNAG 1 cut(s) 129
DpnI GATC 2 cut(s) 250, 410
DpnII GATC 2 cut(s) 248, 408
EciI GGCGGA 1 cut(s) 421
Ecl136II GAGCTC 2 cut(s) 135, 310
Eco24I GRGCYC 2 cut(s) 137, 312
Eco47I GGWCC 2 cut(s) 258, 279
Eco53kI GAGCTC 2 cut(s) 135, 310
EcoICRI GAGCTC 2 cut(s) 135, 310
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 137, 312
FaeI CATG 4 cut(s) 34, 46, 101, 316
FaiI YATR 6 cut(s) 32, 44, 99, 117, 314, 400
FatI CATG 4 cut(s) 30, 42, 97, 312
FauI CCCGC 1 cut(s) 468
Fnu4HI GCNGC 3 cut(s) 17, 20, 318
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 2 cut(s) 137, 312
Fsp4HI GCNGC 3 cut(s) 17, 20, 318
FspBI CTAG 2 cut(s) 246, 338
GluI GCNGC 3 cut(s) 17, 20, 318
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 2 cut(s) 113, 320
HapII CCGG 2 cut(s) 277, 287
Hin1II CATG 4 cut(s) 34, 46, 101, 316
HinfI GANTC 4 cut(s) 101, 204, 263, 375
HpaII CCGG 2 cut(s) 277, 287
HphI GGTGA 3 cut(s) 96, 148, 347
Hpy188I TCNGA 5 cut(s) 132, 241, 262, 396, 413
Hpy188III TCNNGA 3 cut(s) 36, 201, 372
HpyAV CCTTC 2 cut(s) 207, 378
HpyCH4III ACNGT 1 cut(s) 431
HpyCH4V TGCA 2 cut(s) 22, 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 250
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 4 cut(s) 34, 46, 101, 316
Kzo9I GATC 2 cut(s) 248, 408
LmnI GCTCC 3 cut(s) 140, 236, 307
LpnPI CCDG 8 cut(s) 95, 122, 241, 241, 248, 290, 300, 485
Lsp1109I GCAGC 2 cut(s) 3, 6
LweI GCATC 2 cut(s) 315, 357
MaeI CTAG 2 cut(s) 246, 338
MalI GATC 2 cut(s) 250, 410
MboI GATC 2 cut(s) 248, 408
MboII GAAGA 2 cut(s) 62, 65
MflI RGATCY 1 cut(s) 408
MhlI GDGCHC 2 cut(s) 137, 312
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 114, 285
MroXI GAANNNNTTC 1 cut(s) 367
MseI TTAA 2 cut(s) 57, 297
MspA1I CMGCKG 1 cut(s) 475
MspI CCGG 2 cut(s) 277, 287
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 25, 250
NdeII GATC 2 cut(s) 248, 408
NlaIII CATG 4 cut(s) 34, 46, 101, 316
NlaIV GGNNCC 2 cut(s) 217, 410
NspV TTCGAA 1 cut(s) 378
PdmI GAANNNNTTC 1 cut(s) 367
PfeI GAWTC 3 cut(s) 101, 204, 375
PflFI GACNNNGTC 1 cut(s) 7
PkrI GCNGC 3 cut(s) 18, 21, 319
PleI GAGTC 1 cut(s) 257
PpsI GAGTC 1 cut(s) 257
Psp124BI GAGCTC 2 cut(s) 137, 312
Psp6I CCWGG 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 2 cut(s) 217, 410
PspPI GGNCC 3 cut(s) 112, 258, 279
PsuI RGATCY 1 cut(s) 408
PsyI GACNNNGTC 1 cut(s) 7
SacI GAGCTC 2 cut(s) 137, 312
SaqAI TTAA 2 cut(s) 57, 297
SatI GCNGC 3 cut(s) 17, 20, 318
Sau3AI GATC 2 cut(s) 248, 408
Sau96I GGNCC 3 cut(s) 112, 258, 279
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 2 cut(s) 137, 312
SetI ASST 9 cut(s) 137, 146, 199, 233, 312, 337, 343, 421, 453
SfaNI GCATC 2 cut(s) 315, 357
SfuI TTCGAA 1 cut(s) 378
SinI GGWCC 2 cut(s) 258, 279
SsiI CCGC 3 cut(s) 317, 406, 475
SspMI CTAG 2 cut(s) 246, 338
SstI GAGCTC 2 cut(s) 137, 312
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 431
TaqI TCGA 6 cut(s) 35, 202, 323, 361, 373, 378
TauI GCSGC 1 cut(s) 320
TfiI GAWTC 3 cut(s) 101, 204, 375
Tru1I TTAA 2 cut(s) 57, 297
Tru9I TTAA 2 cut(s) 57, 297
TseI GCWGC 2 cut(s) 16, 19
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 2 cut(s) 258, 279
XmnI GAANNNNTTC 1 cut(s) 367
XspI CTAG 2 cut(s) 246, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.