Rh5DG246700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0025007
Physical Location & Seq
Reverse (-)
28189835 .. 28200497
10663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG246700.1

Sequence Viewer

Length: 255 bp
ATGGCACTCGGAGATTCGGGTCTAGCAGAGGTGCTGAGACACCGATCGTCCCTTCTGCATCACGATGGTGGAGCTGATGATCTTGACGACGAGAGTGTGGCCGCTCATTCCGGGTCTGAGATCGCTGACCTTGATGAACACGGGCTTTCAGAGCCCCGGCTTGGCATTGCTCTGCTAGGCTTGTTGGGCCGACGTCGGTCCCGCTTTGTTGGTGGTGGTGATTGGTTTCTCAAGTCCACAAACCCTAGAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

8.97

Weight (kDa)

5.36

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025007)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0034501
rosa_samantha Rh3CG290300 Rh5DG246700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 104
AciI CCGC 2 cut(s) 102, 202
AcoI YGGCCR 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 193
AfiI CCNNNNNNNGG 1 cut(s) 161
AleI CACNNNNGTG 1 cut(s) 66
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 1 cut(s) 31
AoxI GGCC 2 cut(s) 99, 187
AspS9I GGNCC 2 cut(s) 187, 198
AsuC2I CCSGG 2 cut(s) 112, 157
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 156
BccI CCATC 1 cut(s) 59
BcnI CCSGG 2 cut(s) 112, 157
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 3 cut(s) 23, 176, 246
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 112, 157
Bme18I GGWCC 1 cut(s) 198
BmgT120I GGNCC 2 cut(s) 187, 198
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 112, 157
BmsI GCATC 1 cut(s) 67
BoxI GACNNNNGTC 1 cut(s) 196
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 112, 157
BsaHI GRCGYC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 161
Bse3DI GCAATG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 161
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 2 cut(s) 26, 108
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 2 cut(s) 101, 189
BsiEI CGRYCG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 111, 157
BslFI GGGAC 2 cut(s) 34, 184
BslI CCNNNNNNNGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 34, 184
BsnI GGCC 2 cut(s) 101, 189
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 44, 79, 120
BspACI CCGC 2 cut(s) 102, 202
BspANI GGCC 2 cut(s) 101, 189
BspCNI CTCAG 2 cut(s) 27, 109
BspLI GGNNCC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 104
BsrDI GCAATG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 3 cut(s) 44, 79, 120
BssNI GRCGYC 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 35, 117
BstKTI GATC 3 cut(s) 47, 82, 123
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 3 cut(s) 44, 79, 120
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 2 cut(s) 151, 186
BstPAI GACNNNNGTC 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 110, 155
BsuRI GGCC 2 cut(s) 101, 189
Cfr13I GGNCC 2 cut(s) 187, 198
CviJI RGCY 7 cut(s) 74, 101, 145, 154, 160, 180, 189
CviKI_1 RGCY 7 cut(s) 74, 101, 145, 154, 160, 180, 189
DdeI CTNAG 2 cut(s) 35, 117
DpnI GATC 3 cut(s) 46, 81, 122
DpnII GATC 3 cut(s) 44, 79, 120
EaeI YGGCCR 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 156
FaqI GGGAC 2 cut(s) 34, 184
FauI CCCGC 1 cut(s) 209
Fnu4HI GCNGC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 3 cut(s) 23, 176, 246
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 101, 189
HapII CCGG 2 cut(s) 111, 157
Hin1I GRCGYC 1 cut(s) 193
HinfI GANTC 1 cut(s) 14
HpaII CCGG 2 cut(s) 111, 157
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 3 cut(s) 11, 118, 151
Hpy188III TCNNGA 2 cut(s) 62, 83
Hpy8I GTNNAC 1 cut(s) 237
Hpy99I CGWCG 3 cut(s) 92, 195, 198
HpyAV CCTTC 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 186
HpyF3I CTNAG 2 cut(s) 35, 117
HpySE526I ACGT 1 cut(s) 193
Hsp92I GRCGYC 1 cut(s) 193
Kzo9I GATC 3 cut(s) 44, 79, 120
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 2 cut(s) 124, 170
LweI GCATC 1 cut(s) 67
MaeI CTAG 3 cut(s) 23, 176, 246
MaeII ACGT 1 cut(s) 193
MalI GATC 3 cut(s) 46, 81, 122
MbiI CCGCTC 1 cut(s) 104
MboI GATC 3 cut(s) 44, 79, 120
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 1 cut(s) 250
MnlI CCTC 1 cut(s) 22
MslI CAYNNNNRTG 2 cut(s) 63, 66
MspI CCGG 2 cut(s) 111, 157
MspR9I CCNGG 2 cut(s) 112, 157
MwoI GCNNNNNNNGC 2 cut(s) 151, 186
NciI CCSGG 2 cut(s) 112, 157
NdeII GATC 3 cut(s) 44, 79, 120
NlaIV GGNNCC 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 66
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 103
Ple19I CGATCG 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 2 cut(s) 187, 198
PvuI CGATCG 1 cut(s) 47
RseI CAYNNNNRTG 2 cut(s) 63, 66
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 3 cut(s) 44, 79, 120
Sau96I GGNCC 2 cut(s) 187, 198
ScrFI CCNGG 2 cut(s) 112, 157
SduI GDGCHC 1 cut(s) 156
SetI ASST 4 cut(s) 33, 76, 132, 196
SfaNI GCATC 1 cut(s) 67
SinI GGWCC 1 cut(s) 198
SmiMI CAYNNNNRTG 2 cut(s) 63, 66
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 250
SsiI CCGC 2 cut(s) 102, 202
SspMI CTAG 3 cut(s) 23, 176, 246
StyD4I CCNGG 2 cut(s) 110, 155
TaiI ACGT 1 cut(s) 196
TaqII GACCGA 1 cut(s) 186
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 198
XspI CTAG 3 cut(s) 23, 176, 246
ZraI GACGTC 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.