Rh3CG290300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0025007
Physical Location & Seq
Forward (+)
29439688 .. 29444494
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG290300.1

Sequence Viewer

Length: 417 bp
ATGAACATTAGTTTTAGAACTTTTGATAATGCAGCACTCGGAGATTCGGGTCTAGCAGAGGTGCTGAGACACCGATCGTCCCTTCTGCATCACGGTGGTGAAGCTGATGATCTTGACGACGAGAGTATGGCCGCTCATTCCGGCTCCCTGTCCGAGCCTAGATCGCTCTGGTCCTACTCCAAGCCCATCCGGTCCAAACTGAAATTCATTAACTCAAAGGAGCTCATGGTGGGCTCGACGCCGACAGCTCCAGGTTATCGCATCTCCCGCCACCGAAAGCCGCAGATATCCGGGCGGATCCGAGGAGGTATTGAAACCTGTGGAGGAGGGGTTGTGGAGGTGGTGGTAGGGCAGAAGCGCCAGTGGGGGGTGGGTGAAGACATTAGGGCGTGGGATAAGGAGATGAGGGAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.19

Weight (kDa)

8.85

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025007)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0034501
rosa_samantha Rh3CG290300 Rh5DG246700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 4 cut(s) 132, 268, 281, 295
AclWI GGATC 2 cut(s) 292, 305
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 1 cut(s) 250
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AleI CACNNNNGTG 1 cut(s) 96
AluBI AGCT 3 cut(s) 104, 223, 248
AluI AGCT 3 cut(s) 104, 223, 248
Alw21I GWGCWC 1 cut(s) 225
Alw26I GTCTC 1 cut(s) 61
AlwI GGATC 2 cut(s) 292, 305
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 2 cut(s) 171, 192
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 2 cut(s) 110, 386
AvaII GGWCC 2 cut(s) 171, 192
BamHI GGATCC 1 cut(s) 297
BanII GRGCYC 2 cut(s) 225, 236
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 61
BfaI CTAG 2 cut(s) 53, 159
BfoI RGCGCY 1 cut(s) 361
BisI GCNGC 3 cut(s) 33, 132, 281
BlsI GCNGC 3 cut(s) 34, 133, 282
Bme1390I CCNGG 2 cut(s) 252, 292
Bme18I GGWCC 2 cut(s) 171, 192
BmgT120I GGNCC 2 cut(s) 171, 192
BmiI GGNNCC 2 cut(s) 145, 299
BmrFI CCNGG 2 cut(s) 252, 292
BmsI GCATC 2 cut(s) 97, 270
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 189
BsaXI ACNNNNNCTCC 4 cut(s) 315, 318, 345, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 361
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 2 cut(s) 318, 339
BseXI GCAGC 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 3 cut(s) 141, 190, 291
BslFI GGGAC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 64
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 225, 236
Bsp143I GATC 4 cut(s) 74, 109, 161, 297
BspACI CCGC 4 cut(s) 132, 268, 281, 295
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 145, 299
BspPI GGATC 2 cut(s) 292, 305
BsrBI CCGCTC 1 cut(s) 134
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 4 cut(s) 74, 109, 161, 297
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 4 cut(s) 77, 112, 164, 300
BstMAI GTCTC 1 cut(s) 61
BstMBI GATC 4 cut(s) 74, 109, 161, 297
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 2 cut(s) 163, 267
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 2 cut(s) 250, 290
BstV1I GCAGC 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 186
BtsIMutI CAGTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 2 cut(s) 171, 192
CseI GACGC 1 cut(s) 247
CviAII CATG 1 cut(s) 226
CviJI RGCY 9 cut(s) 104, 131, 144, 157, 184, 223, 234, 248, 280
CviKI_1 RGCY 9 cut(s) 104, 131, 144, 157, 184, 223, 234, 248, 280
DdeI CTNAG 1 cut(s) 65
DpnI GATC 4 cut(s) 76, 111, 163, 299
DpnII GATC 4 cut(s) 74, 109, 161, 297
EaeI YGGCCR 1 cut(s) 129
EciI GGCGGA 1 cut(s) 310
Ecl136II GAGCTC 1 cut(s) 223
Eco24I GRGCYC 2 cut(s) 225, 236
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 2 cut(s) 171, 192
Eco53kI GAGCTC 1 cut(s) 223
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 250
EcoRV GATATC 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 225, 236
FaeI CATG 1 cut(s) 229
FaiI YATR 2 cut(s) 128, 227
FaqI GGGAC 1 cut(s) 64
FatI CATG 1 cut(s) 225
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 3 cut(s) 33, 132, 281
FokI GGATG 1 cut(s) 173
FriOI GRGCYC 2 cut(s) 225, 236
Fsp4HI GCNGC 3 cut(s) 33, 132, 281
FspBI CTAG 2 cut(s) 53, 159
GlaI GCGC 1 cut(s) 359
GluI GCNGC 3 cut(s) 33, 132, 281
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 1 cut(s) 131
HapII CCGG 3 cut(s) 141, 190, 291
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 360
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HinfI GANTC 1 cut(s) 44
HpaII CCGG 3 cut(s) 141, 190, 291
HphI GGTGA 2 cut(s) 110, 386
Hpy188I TCNGA 3 cut(s) 41, 154, 302
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 2 cut(s) 122, 241
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 32, 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 267
HpyF3I CTNAG 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 1 cut(s) 358
Kzo9I GATC 4 cut(s) 74, 109, 161, 297
LmnI GCTCC 3 cut(s) 149, 220, 253
LpnPI CCDG 9 cut(s) 154, 154, 161, 203, 237, 264, 304, 331, 374
Lsp1109I GCAGC 1 cut(s) 44
LweI GCATC 2 cut(s) 97, 270
MaeI CTAG 2 cut(s) 53, 159
MalI GATC 4 cut(s) 76, 111, 163, 299
MbiI CCGCTC 1 cut(s) 134
MboI GATC 4 cut(s) 74, 109, 161, 297
MboII GAAGA 1 cut(s) 389
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 2 cut(s) 225, 236
MluCI AATT 1 cut(s) 203
MnlI CCTC 8 cut(s) 52, 296, 299, 317, 320, 331, 399, 403
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 2 cut(s) 93, 96
MspI CCGG 3 cut(s) 141, 190, 291
MspR9I CCNGG 2 cut(s) 252, 292
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 163, 267
NciI CCSGG 1 cut(s) 292
NdeII GATC 4 cut(s) 74, 109, 161, 297
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 2 cut(s) 145, 299
OliI CACNNNNGTG 1 cut(s) 96
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 34, 133, 282
Ple19I CGATCG 1 cut(s) 77
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 145, 299
PspPI GGNCC 2 cut(s) 171, 192
PsuI RGATCY 1 cut(s) 297
PvuI CGATCG 1 cut(s) 77
RseI CAYNNNNRTG 2 cut(s) 93, 96
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 33, 132, 281
Sau3AI GATC 4 cut(s) 74, 109, 161, 297
Sau96I GGNCC 2 cut(s) 171, 192
ScrFI CCNGG 2 cut(s) 252, 292
SduI GDGCHC 2 cut(s) 225, 236
SetI ASST 8 cut(s) 63, 106, 225, 250, 256, 310, 320, 342
SfaNI GCATC 2 cut(s) 97, 270
SinI GGWCC 2 cut(s) 171, 192
SmiMI CAYNNNNRTG 2 cut(s) 93, 96
Sse9I AATT 1 cut(s) 203
SsiI CCGC 4 cut(s) 132, 268, 281, 295
SspMI CTAG 2 cut(s) 53, 159
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 250, 290
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 236
TasI AATT 1 cut(s) 203
TauI GCSGC 2 cut(s) 134, 283
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 368
TseI GCWGC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 17, 196
TspRI CASTG 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 171, 192
XapI RAATTY 1 cut(s) 203
XspI CTAG 2 cut(s) 53, 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.