RchiOBHm_Chr5g0034841
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. gTMT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025021
Physical Location & Seq
Forward (+)
28719886 .. 28724201
4316 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 246 bp
ATGTTGCCAACAACTAGGTATTACGGTGATCACTTTCTAACTTTGATCATTTGCAGAACTGCAAGAACGAGTATCAAAGTGTCTTTCCAGGGCAGCAGACTTTCAGACAAGTGTCCAATTGGGAATGTAGTGGATGTTGGGTGTGGGATTGGAGGGAGCTCCAGATATCTGGCTAGCAAATACGGGGCCAATTGCAAAGGGATTAGGCTCAGAGGGCCAATGGTCTTGCTGCTGCTCAAGGCCTAG

Protein Analysis

81

Amino Acids

8.78

Weight (kDa)

9.97

Isoelectric Point (pI)

7.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025021)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0034841
rosa_samantha Rh2BG221700 Rh6DG121100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 161
AoxI GGCC 3 cut(s) 186, 215, 240
ApeKI GCWGC 3 cut(s) 93, 229, 232
AspS9I GGNCC 2 cut(s) 186, 215
AsuHPI GGTGA 1 cut(s) 38
AsuNHI GCTAGC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 3 cut(s) 105, 216, 219
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 2 cut(s) 28, 45
BfaI CTAG 3 cut(s) 15, 174, 244
BisI GCNGC 3 cut(s) 94, 230, 233
BlsI GCNGC 3 cut(s) 95, 231, 234
Bme1390I CCNGG 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 186, 215
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 89
BmtI GCTAGC 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 111
BpmI CTGGAG 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 105, 216, 219
BshFI GGCC 3 cut(s) 188, 217, 242
BsiHKAI GWGCWC 1 cut(s) 161
BsnI GGCC 3 cut(s) 188, 217, 242
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 2 cut(s) 28, 45
BspANI GGCC 3 cut(s) 188, 217, 242
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 187
BspOI GCTAGC 1 cut(s) 177
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 28, 45
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 31, 48
BstMBI GATC 2 cut(s) 28, 45
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 89
BstPAI GACNNNNGTC 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 105, 216, 219
BstXI CCANNNNNNTGG 1 cut(s) 169
BsuRI GGCC 3 cut(s) 188, 217, 242
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 186, 215
CviJI RGCY 6 cut(s) 159, 173, 188, 208, 217, 242
CviKI_1 RGCY 6 cut(s) 159, 173, 188, 208, 217, 242
DdeI CTNAG 1 cut(s) 209
DpnI GATC 2 cut(s) 30, 47
DpnII GATC 2 cut(s) 28, 45
Ecl136II GAGCTC 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 242
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 161
FbaI TGATCA 2 cut(s) 28, 45
Fnu4HI GCNGC 3 cut(s) 94, 230, 233
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 94, 230, 233
FspBI CTAG 3 cut(s) 15, 174, 244
GluI GCNGC 3 cut(s) 94, 230, 233
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 3 cut(s) 188, 217, 242
HphI GGTGA 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 106, 212
Hpy188III TCNNGA 1 cut(s) 162
HpyCH4III ACNGT 1 cut(s) 26
HpyCH4V TGCA 3 cut(s) 54, 62, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 209
Ksp22I TGATCA 2 cut(s) 28, 45
Kzo9I GATC 2 cut(s) 28, 45
LmnI GCTCC 2 cut(s) 156, 164
LpnPI CCDG 4 cut(s) 74, 101, 155, 175
Lsp1109I GCAGC 3 cut(s) 105, 216, 219
MaeI CTAG 3 cut(s) 15, 174, 244
MalI GATC 2 cut(s) 30, 47
MboI GATC 2 cut(s) 28, 45
MfeI CAATTG 2 cut(s) 117, 190
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 117, 190
MnlI CCTC 2 cut(s) 146, 206
MspR9I CCNGG 1 cut(s) 89
MunI CAATTG 2 cut(s) 117, 190
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 214
NdeII GATC 2 cut(s) 28, 45
NheI GCTAGC 1 cut(s) 173
NlaIV GGNNCC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 242
PkrI GCNGC 3 cut(s) 95, 231, 234
PshAI GACNNNNGTC 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 2 cut(s) 186, 215
SacI GAGCTC 1 cut(s) 161
SatI GCNGC 3 cut(s) 94, 230, 233
Sau3AI GATC 2 cut(s) 28, 45
Sau96I GGNCC 2 cut(s) 186, 215
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 161
SetI ASST 2 cut(s) 20, 161
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 117, 190
SseBI AGGCCT 1 cut(s) 242
SspMI CTAG 3 cut(s) 15, 174, 244
SstI GAGCTC 1 cut(s) 161
StuI AGGCCT 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 1 cut(s) 26
TasI AATT 2 cut(s) 117, 190
TseI GCWGC 3 cut(s) 93, 229, 232
XspI CTAG 3 cut(s) 15, 174, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.