Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0025021

Physical Location & Seq

Genomic Coordinates Reverse (-)

21439333 .. 21443546

Gene Structure 4214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG221700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGTAGTCTGCATGCTTCTCTGGAGAAAGTACAGCACCCTACTCTATTCTTTGAGGGACAACAAGTGTCCAATTGGGAATGTAGTGGATGTTGGGTGTGGGATTGGAGGGAGCTCCAGATATCTGGCTAGCAAATACGGGGCCAATTGCAAAGGGAATAGACTCAGAGGGCCAATGGTCTTGCTGCTGCTCAAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006766 GO:0006775 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0009058 GO:0009110 GO:0009507 GO:0009536 GO:0009987 GO:0010189 GO:0016740 GO:0016741 GO:0018130 GO:0032259 GO:0042360 GO:0042362 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0050342 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00130 ko01100 ko01110 map00130 map01100 map01110

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

66

Amino Acids

7.24

Weight (kDa)

9.81

Isoelectric Point (pI)

21.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025021)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0034841
rosa_samantha	Rh2BG221700 Rh6DG121100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	32
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
Alw21I	GWGCWC	1 cut(s)	116
AoxI	GGCC	3 cut(s)	141, 170, 195
ApeKI	GCWGC	2 cut(s)	184, 187
AspS9I	GGNCC	2 cut(s)	141, 170
AsuNHI	GCTAGC	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	171, 174
BfaI	CTAG	2 cut(s)	129, 199
BisI	GCNGC	2 cut(s)	185, 188
BlsI	GCNGC	2 cut(s)	186, 189
BmgT120I	GGNCC	2 cut(s)	141, 170
BmiI	GGNNCC	1 cut(s)	142
BmtI	GCTAGC	1 cut(s)	132
BpmI	CTGGAG	2 cut(s)	43, 100
BpuEI	CTTGAG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	171, 174
BshFI	GGCC	3 cut(s)	143, 172, 197
BsiHKAI	GWGCWC	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	71
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	3 cut(s)	143, 172, 197
Bsp1286I	GDGCHC	1 cut(s)	116
BspANI	GGCC	3 cut(s)	143, 172, 197
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	142
BspOI	GCTAGC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	14, 130
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	171, 174
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	143, 172, 197
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	2 cut(s)	14, 130
Cfr13I	GGNCC	2 cut(s)	141, 170
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	5 cut(s)	114, 128, 143, 172, 197
CviKI_1	RGCY	5 cut(s)	114, 128, 143, 172, 197
CviQI	GTAC	1 cut(s)	31
DdeI	CTNAG	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	122
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoRV	GATATC	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	1 cut(s)	16
FaiI	YATR	1 cut(s)	14
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	12
Fnu4HI	GCNGC	2 cut(s)	185, 188
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	185, 188
FspBI	CTAG	2 cut(s)	129, 199
GluI	GCNGC	2 cut(s)	185, 188
GsuI	CTGGAG	2 cut(s)	43, 100
HaeIII	GGCC	3 cut(s)	143, 172, 197
Hin1II	CATG	1 cut(s)	16
HinfI	GANTC	1 cut(s)	162
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	2 cut(s)	22, 117
HpyCH4V	TGCA	2 cut(s)	12, 150
HpyF3I	CTNAG	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	111, 119
LpnPI	CCDG	3 cut(s)	7, 110, 130
Lsp1109I	GCAGC	2 cut(s)	171, 174
MaeI	CTAG	2 cut(s)	129, 199
MfeI	CAATTG	2 cut(s)	72, 145
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	2 cut(s)	72, 145
MlyI	GAGTC	1 cut(s)	156
MnlI	CCTC	3 cut(s)	48, 101, 161
MunI	CAATTG	2 cut(s)	72, 145
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	16
PaeI	GCATGC	1 cut(s)	16
PceI	AGGCCT	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	186, 189
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	2 cut(s)	141, 170
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SacI	GAGCTC	1 cut(s)	116
SatI	GCNGC	2 cut(s)	185, 188
Sau96I	GGNCC	2 cut(s)	141, 170
SchI	GAGTC	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	1 cut(s)	116
SgeI	CNNG	8 cut(s)	25, 34, 76, 129, 137, 141, 151, 193
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	16
Sse9I	AATT	2 cut(s)	72, 145
SseBI	AGGCCT	1 cut(s)	197
SspMI	CTAG	2 cut(s)	129, 199
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	197
TasI	AATT	2 cut(s)	72, 145
TatI	WGTACW	1 cut(s)	30
TseI	GCWGC	2 cut(s)	184, 187
XceI	RCATGY	1 cut(s)	16
XspI	CTAG	2 cut(s)	129, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.